Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108389Family c.36.1.6: TK-like Pyr module [88735] (2 protein domains)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 2108404Protein Transketolase (TK), Pyr module [88736] (4 species)
  7. 2108405Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [88737] (7 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

  1. Domain(s) for 1ay0:
    1. 2108418Domain d1ay0a2: 1ay0 A:338-534 [31824]
      Other proteins in same PDB: d1ay0a1, d1ay0a3, d1ay0b1, d1ay0b3
      complexed with ca, tpp
    2. 2108419Domain d1ay0b2: 1ay0 B:338-534 [31826]
      Other proteins in same PDB: d1ay0a1, d1ay0a3, d1ay0b1, d1ay0b3
      complexed with ca, tpp
  2. Domain(s) for 1gpu:
    1. 2108406Domain d1gpua2: 1gpu A:338-534 [65455]
      Other proteins in same PDB: d1gpua1, d1gpua3, d1gpub1, d1gpub3
      complexed with ca, thd
    2. 2108407Domain d1gpub2: 1gpu B:338-534 [65458]
      Other proteins in same PDB: d1gpua1, d1gpua3, d1gpub1, d1gpub3
      complexed with ca, thd
  3. Domain(s) for 1ngs:
    1. 2108416Domain d1ngsa2: 1ngs A:338-534 [31820]
      Other proteins in same PDB: d1ngsa1, d1ngsa3, d1ngsb1, d1ngsb3
      complexed with ca, e4p, tpp
    2. 2108417Domain d1ngsb2: 1ngs B:338-534 [31822]
      Other proteins in same PDB: d1ngsa1, d1ngsa3, d1ngsb1, d1ngsb3
      complexed with ca, e4p, tpp
  4. Domain(s) for 1tka:
    1. 2108414Domain d1tkaa2: 1tka A:338-534 [31816]
      Other proteins in same PDB: d1tkaa1, d1tkaa3, d1tkab1, d1tkab3
      complexed with ca, n3t
    2. 2108415Domain d1tkab2: 1tka B:338-534 [31818]
      Other proteins in same PDB: d1tkaa1, d1tkaa3, d1tkab1, d1tkab3
      complexed with ca, n3t
  5. Domain(s) for 1tkb:
    1. 2108410Domain d1tkba2: 1tkb A:338-534 [31808]
      Other proteins in same PDB: d1tkba1, d1tkba3, d1tkbb1, d1tkbb3
      complexed with ca, n1t
    2. 2108411Domain d1tkbb2: 1tkb B:338-534 [31810]
      Other proteins in same PDB: d1tkba1, d1tkba3, d1tkbb1, d1tkbb3
      complexed with ca, n1t
  6. Domain(s) for 1tkc:
    1. 2108412Domain d1tkca2: 1tkc A:338-534 [31812]
      Other proteins in same PDB: d1tkca1, d1tkca3, d1tkcb1, d1tkcb3
      complexed with ca, m6t
    2. 2108413Domain d1tkcb2: 1tkc B:338-534 [31814]
      Other proteins in same PDB: d1tkca1, d1tkca3, d1tkcb1, d1tkcb3
      complexed with ca, m6t
  7. Domain(s) for 1trk:
    1. 2108408Domain d1trka2: 1trk A:338-534 [31804]
      Other proteins in same PDB: d1trka1, d1trka3, d1trkb1, d1trkb3
      complexed with ca, tpp
    2. 2108409Domain d1trkb2: 1trk B:338-534 [31806]
      Other proteins in same PDB: d1trka1, d1trka3, d1trkb1, d1trkb3
      complexed with ca, tpp

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.6 Transketolase (TK), Pyr module

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.6 Transketolase (TK), Pyr module: