Lineage for Species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2089476Superfamily c.1.19: Cobalamin (vitamin B12)-dependent enzymes [51703] (4 families) (S)
  5. 2089477Family c.1.19.1: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain [51704] (2 protein domains)
    the subunits are clearly related but only one (alpha) is active
    automatically mapped to Pfam PF01642
  6. 2089478Protein Methylmalonyl-CoA mutase alpha subunit, domain 1 [88709] (1 species)
  7. 2089479Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] [88710] (8 PDB entries)

PDB entries in Species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]:

  1. Domain(s) for 1e1c:
    1. 2089490Domain d1e1ca1: 1e1c A:2-560 [29636]
      Other proteins in same PDB: d1e1ca2, d1e1cb1, d1e1cb2, d1e1cc2, d1e1cd1, d1e1cd2
      complexed with b12, dca; mutant
    2. 2089491Domain d1e1cc1: 1e1c C:2-560 [29638]
      Other proteins in same PDB: d1e1ca2, d1e1cb1, d1e1cb2, d1e1cc2, d1e1cd1, d1e1cd2
      complexed with b12, dca; mutant
  2. Domain(s) for 1req:
    1. 2089482Domain d1reqa1: 1req A:2-560 [29620]
      Other proteins in same PDB: d1reqa2, d1reqb1, d1reqb2, d1reqc2, d1reqd1, d1reqd2
      complexed with b12, dca, gol
    2. 2089483Domain d1reqc1: 1req C:2-560 [29622]
      Other proteins in same PDB: d1reqa2, d1reqb1, d1reqb2, d1reqc2, d1reqd1, d1reqd2
      complexed with b12, dca, gol
  3. Domain(s) for 2req:
    1. 2089492Domain d2reqa1: 2req A:4-560 [29640]
      Other proteins in same PDB: d2reqa2, d2reqb1, d2reqb2, d2reqc2, d2reqd1, d2reqd2
      complexed with b12, coa
    2. 2089493Domain d2reqc1: 2req C:4-560 [29642]
      Other proteins in same PDB: d2reqa2, d2reqb1, d2reqb2, d2reqc2, d2reqd1, d2reqd2
      complexed with b12, coa
  4. Domain(s) for 3req:
  5. Domain(s) for 4req:
    1. 2089486Domain d4reqa1: 4req A:3-560 [29628]
      Other proteins in same PDB: d4reqa2, d4reqb1, d4reqb2, d4reqc2, d4reqd1, d4reqd2
      complexed with 5ad, b12, gol, mca, sca
    2. 2089487Domain d4reqc1: 4req C:3-560 [29630]
      Other proteins in same PDB: d4reqa2, d4reqb1, d4reqb2, d4reqc2, d4reqd1, d4reqd2
      complexed with 5ad, b12, gol, mca, sca
  6. Domain(s) for 5req:
    1. 2089488Domain d5reqa1: 5req A:4-560 [29632]
      Other proteins in same PDB: d5reqa2, d5reqb1, d5reqb2, d5reqc2, d5reqd1, d5reqd2
      complexed with b12, gol, mcd, scd; mutant
    2. 2089489Domain d5reqc1: 5req C:4-560 [29634]
      Other proteins in same PDB: d5reqa2, d5reqb1, d5reqb2, d5reqc2, d5reqd1, d5reqd2
      complexed with b12, gol, mcd, scd; mutant
  7. Domain(s) for 6req:
    1. 2089484Domain d6reqa1: 6req A:2-560 [29624]
      Other proteins in same PDB: d6reqa2, d6reqb1, d6reqb2, d6reqc2, d6reqd1, d6reqd2
      complexed with 3cp, b12, gol
    2. 2089485Domain d6reqc1: 6req C:2-560 [29626]
      Other proteins in same PDB: d6reqa2, d6reqb1, d6reqb2, d6reqc2, d6reqd1, d6reqd2
      complexed with 3cp, b12, gol
  8. Domain(s) for 7req:
    1. 2089480Domain d7reqa1: 7req A:4-560 [29616]
      Other proteins in same PDB: d7reqa2, d7reqb1, d7reqb2, d7reqc2, d7reqd1, d7reqd2
      complexed with 2cp, b12, gol
    2. 2089481Domain d7reqc1: 7req C:4-560 [29618]
      Other proteins in same PDB: d7reqa2, d7reqb1, d7reqb2, d7reqc2, d7reqd1, d7reqd2
      complexed with 2cp, b12, gol

More info for Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] from c.1.19.1 Methylmalonyl-CoA mutase alpha subunit, domain 1

Timeline for Species Propionibacterium freudenreichii, subsp. shermanii [TaxId:1744] from c.1.19.1 Methylmalonyl-CoA mutase alpha subunit, domain 1: