SCOPe 2.08: Family b.121.6.1: Papovaviridae-like VP

Lineage for Family b.121.6.1: Papovaviridae-like VP

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

Proteins:

1. Papillomavirus L1 protein [49692] (1 species)

   • Species Human papillomavirus type 16 [TaxId:333760] [49693] (1 PDB entry)

2. Polyomavirus coat proteins [49657] (2 species)

   1. Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)

   2. Species Simian virus 40, Sv40 [TaxId:10633] [49691] (1 PDB entry)

3. automated matches [191200] (13 species)
   not a true protein

   1. Species Finch polyomavirus [TaxId:349564] [389100] (1 PDB entry)

   2. Species Human papillomavirus type 16 [TaxId:333760] [399392] (1 PDB entry)

   3. Species Human papillomavirus type 33 [TaxId:10586] [360822] (1 PDB entry)

   4. Species Human papillomavirus type 52 [TaxId:10618] [360675] (1 PDB entry)

   5. Species Human papillomavirus type 58 [TaxId:10598] [340764] (2 PDB entries)

   6. Species Human papillomavirus [TaxId:10566] [189523] (1 PDB entry)

   7. Species Human polyomavirus 9 [TaxId:943908] [229433] (7 PDB entries)

   8. Species Jc polyomavirus type 3 [TaxId:804310] [271736] (6 PDB entries)

   9. Species Jc polyomavirus [TaxId:10632] [270722] (7 PDB entries)

   10. Species Merkel cell polyomavirus [TaxId:493803] [226460] (4 PDB entries)

   11. Species Mus musculus polyomavirus 1 [TaxId:1891730] [390358] (1 PDB entry)

   12. Species Sheep polyomavirus 1 [TaxId:1634381] [389098] (1 PDB entry)

   13. Species Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909] [275642] (6 PDB entries)

More info for Family b.121.6.1: Papovaviridae-like VP

Timeline for Family b.121.6.1: Papovaviridae-like VP:

• Family b.121.6.1: Papovaviridae-like VP first appeared in SCOP 1.65
  
• Family b.121.6.1: Papovaviridae-like VP appears in SCOPe 2.07