SCOPe 2.03: Protein: Sobemovirus coat protein

Lineage for Protein: Sobemovirus coat protein

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)
Family b.121.4.7: Tombusviridae-like VP [88643] (5 proteins)
Protein Sobemovirus coat protein [88644] (4 species)

Species:

Cocksfoot mottle virus [TaxId:40979] [82010] (1 PDB entry)
- Domains for 1ng0:
  1. Domain d1ng0a_: 1ng0 A: [80475]
    complexed with ca
  2. Domain d1ng0b_: 1ng0 B: [80476]
    complexed with ca
  3. Domain d1ng0c_: 1ng0 C: [80477]
    complexed with ca
RYMV (Rice yellow mottle virus) [TaxId:31744] [49626] (1 PDB entry)
- Domains for 1f2n:
  1. Domain d1f2na_: 1f2n A: [23291]
    complexed with ca
  2. Domain d1f2nb_: 1f2n B: [23292]
    complexed with ca
  3. Domain d1f2nc_: 1f2n C: [23293]
    complexed with ca
SBMV (Southern bean mosaic virus), cow pea strain [TaxId:12139] [49632] (1 PDB entry)
- Domains for 4sbv:
  1. Domain d4sbva_: 4sbv A: [23299]
    complexed with ca
  2. Domain d4sbvb_: 4sbv B: [23300]
    complexed with ca
  3. Domain d4sbvc_: 4sbv C: [23301]
    complexed with ca
SMV (Sesbania mosaic virus) [TaxId:12558] [49624] (5 PDB entries)
Uniprot Q9EB06
1. Domains for 1smv:
  1. Domain d1smva_: 1smv A: [23288]
    complexed with ca
  2. Domain d1smvb_: 1smv B: [23289]
    complexed with ca
  3. Domain d1smvc_: 1smv C: [23290]
    complexed with ca
2. Domain for 1vak:
  - Domain d1vaka_: 1vak A: [113600]
    deletion mutant
    complexed with ca; mutant
3. Domain for 1vb2:
  - Domain d1vb2a_: 1vb2 A: [113602]
    deletion mutant
    mutant
4. Domain for 1vb4:
  - Domain d1vb4a_: 1vb4 A: [113603]
    deletion mutant
    complexed with ca; mutant
5. Domains for 2vq0:
  1. Domain d2vq0a1: 2vq0 A:73-268 [153422]
    automatically matched to d1vaka_
    complexed with ca; mutant
  2. Domain d2vq0b1: 2vq0 B:73-268 [153423]
    automatically matched to d1vaka_
    complexed with ca; mutant
  3. Domain d2vq0c1: 2vq0 C:73-268 [153424]
    automatically matched to d1vaka_
    complexed with ca; mutant

More info for Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP

Timeline for Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP:

Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP first appeared in SCOP 1.65
Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP appears in SCOPe 2.02
Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP appears in SCOPe 2.04
Protein Sobemovirus coat protein from b.121.4.7: Tombusviridae-like VP appears in the current release, SCOPe 2.08