SCOPe 2.06: Family b.121.4.7: Tombusviridae-like VP

Lineage for Family b.121.4.7: Tombusviridae-like VP

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.7: Tombusviridae-like VP [88643] (5 proteins)

Proteins:

1. Carmovirus coat protein [89228] (1 species)

   • Species CarMV (Carnation mottle virus) [TaxId:11986] [89229] (1 PDB entry)

2. Necrovirus coat protein [49637] (1 species)

   • Species TNV (Tobacco necrosis virus) [TaxId:12054] [49638] (1 PDB entry)

3. Sobemovirus coat protein [88644] (4 species)

   1. Species Cocksfoot mottle virus [TaxId:40979] [82010] (1 PDB entry)

   2. Species RYMV (Rice yellow mottle virus) [TaxId:31744] [49626] (1 PDB entry)

   3. Species SBMV (Southern bean mosaic virus), cow pea strain [TaxId:12139] [49632] (1 PDB entry)

   4. Species SMV (Sesbania mosaic virus) [TaxId:12558] [49624] (5 PDB entries)
      Uniprot Q9EB06

4. Tombusvirus coat protein [49633] (1 species)

   • Species TBSV (Tomato bushy stunt virus) [TaxId:12145] [49634] (1 PDB entry)

5. automated matches [190821] (1 species)
   not a true protein

   • Species SMV (Sesbania mosaic virus) [TaxId:12558] [188106] (4 PDB entries)

More info for Family b.121.4.7: Tombusviridae-like VP

Timeline for Family b.121.4.7: Tombusviridae-like VP:

• Family b.121.4.7: Tombusviridae-like VP first appeared in SCOP 1.65
  
• Family b.121.4.7: Tombusviridae-like VP appears in SCOPe 2.05
  
• Family b.121.4.7: Tombusviridae-like VP appears in SCOPe 2.07
  
• Family b.121.4.7: Tombusviridae-like VP appears in the current release, SCOPe 2.08