Lineage for Protein: Human enterovirus B coat proteins

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2075627Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2075647Protein Human enterovirus B coat proteins [88635] (4 species)

Species:

  1. 2075648Human coxsackievirus A9 [TaxId:12067] [49683] (1 PDB entry)
  2. 2075652Human coxsackievirus B3 [TaxId:12072] [49681] (2 PDB entries)
    1. Domains for 1cov:
      1. 2075654Domain d1cov.1: 1cov 4:,2: [83045]
        complexed with myr, plm
      2. 2075655Domain d1cov1_: 1cov 1: [23564]
        complexed with myr, plm
      3. 2075656Domain d1cov3_: 1cov 3: [23566]
        complexed with myr, plm
    2. Domain for 4gb3:
  3. 2075657Human echovirus 1 [TaxId:46633] [49685] (1 PDB entry)
  4. 2075661Human echovirus 11 [TaxId:12078] [74890] (3 PDB entries)
    1. Domains for 1h8t:
      1. 2075662Domain d1h8t.1: 1h8t D:,B: [83061]
        complexed with doa, myr
      2. 2075663Domain d1h8ta_: 1h8t A: [70920]
        complexed with doa, myr
      3. 2075664Domain d1h8tc_: 1h8t C: [70922]
        complexed with doa, myr
    2. Domains for 1upn:
      1. 2075665Domain d1upn.1: 1upn D:,B: [99761]
        Other proteins in same PDB: d1upne1, d1upne2
      2. 2075666Domain d1upna_: 1upn A: [99762]
        Other proteins in same PDB: d1upne1, d1upne2
      3. 2075667Domain d1upnc_: 1upn C: [99763]
        Other proteins in same PDB: d1upne1, d1upne2
    3. Domains for 2c8i:
      1. 2075668Domain d2c8ia1: 2c8i A:1-289 [130103]
        Other proteins in same PDB: d2c8ie1, d2c8ie2, d2c8ie3, d2c8ie4
        automatically matched to d1h8ta_
      2. 2075669Domain d2c8ic1: 2c8i C:1-238 [130104]
        Other proteins in same PDB: d2c8ie1, d2c8ie2, d2c8ie3, d2c8ie4
        automatically matched to d1h8tc_

More info for Protein Human enterovirus B coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein Human enterovirus B coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):

  • Protein Human enterovirus B coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) first appeared in SCOP 1.65
  • Protein Human enterovirus B coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) appears in SCOPe 2.05