Lineage for Protein: Camelid IG heavy chain variable domain, VHh

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017131Protein Camelid IG heavy chain variable domain, VHh [88563] (3 species)

Species:

  1. 2017132Camel (Camelus dromedarius) [TaxId:9838] [88564] (19 PDB entries)
    SQ NA # camelid antibody
    1. Domains for 1bzq:
      1. 2017161Domain d1bzqk_: 1bzq K: [20507]
        Other proteins in same PDB: d1bzqa_, d1bzqb_, d1bzqc_, d1bzqd_
        anti-RNase A VHh domain
        protein/RNA complex; complexed with po4
      2. 2017162Domain d1bzql_: 1bzq L: [20508]
        Other proteins in same PDB: d1bzqa_, d1bzqb_, d1bzqc_, d1bzqd_
        anti-RNase A VHh domain
        protein/RNA complex; complexed with po4
      3. 2017163Domain d1bzqm_: 1bzq M: [20509]
        Other proteins in same PDB: d1bzqa_, d1bzqb_, d1bzqc_, d1bzqd_
        anti-RNase A VHh domain
        protein/RNA complex; complexed with po4
      4. 2017164Domain d1bzqn_: 1bzq N: [20510]
        Other proteins in same PDB: d1bzqa_, d1bzqb_, d1bzqc_, d1bzqd_
        anti-RNase A VHh domain
        protein/RNA complex; complexed with po4
    2. Domains for 1f2x:
      1. 2017154Domain d1f2xk_: 1f2x K: [20511]
        VHh of antibody cab-ca05
      2. 2017155Domain d1f2xl_: 1f2x L: [20512]
        VHh of antibody cab-ca05
    3. Domain for 1g6v:
    4. Domains for 1jto:
      1. 2017156Domain d1jtoa_: 1jto A: [67274]
        Other proteins in same PDB: d1jtol_, d1jtom_
        anti-lysozyme VHh domain
      2. 2017157Domain d1jtob_: 1jto B: [67275]
        Other proteins in same PDB: d1jtol_, d1jtom_
        anti-lysozyme VHh domain
    5. Domains for 1jtp:
      1. 2017147Domain d1jtpa_: 1jtp A: [67278]
        Other proteins in same PDB: d1jtpl_, d1jtpm_
        anti-lysozyme VHh domain
        complexed with fmt, na
      2. 2017148Domain d1jtpb_: 1jtp B: [67279]
        Other proteins in same PDB: d1jtpl_, d1jtpm_
        anti-lysozyme VHh domain
        complexed with fmt, na
    6. Domain for 1jtt:
      • 2017149Domain d1jtta_: 1jtt A: [67282]
        Other proteins in same PDB: d1jttl_
        anti-lysozyme VHh domain
        complexed with fmt, na
    7. Domains for 1kxq:
      1. 2017136Domain d1kxqe_: 1kxq E: [73171]
        Other proteins in same PDB: d1kxqa1, d1kxqa2, d1kxqb1, d1kxqb2, d1kxqc1, d1kxqc2, d1kxqd1, d1kxqd2
        VHh CABAMD9 against alpha-amylase
        complexed with ca, cl
      2. 2017137Domain d1kxqf_: 1kxq F: [73172]
        Other proteins in same PDB: d1kxqa1, d1kxqa2, d1kxqb1, d1kxqb2, d1kxqc1, d1kxqc2, d1kxqd1, d1kxqd2
        VHh CABAMD9 against alpha-amylase
        complexed with ca, cl
      3. 2017138Domain d1kxqg_: 1kxq G: [73173]
        Other proteins in same PDB: d1kxqa1, d1kxqa2, d1kxqb1, d1kxqb2, d1kxqc1, d1kxqc2, d1kxqd1, d1kxqd2
        VHh CABAMD9 against alpha-amylase
        complexed with ca, cl
      4. 2017139Domain d1kxqh_: 1kxq H: [73174]
        Other proteins in same PDB: d1kxqa1, d1kxqa2, d1kxqb1, d1kxqb2, d1kxqc1, d1kxqc2, d1kxqd1, d1kxqd2
        VHh CABAMD9 against alpha-amylase
        complexed with ca, cl
    8. Domains for 1kxt:
      1. 2017151Domain d1kxtb_: 1kxt B: [73179]
        Other proteins in same PDB: d1kxta1, d1kxta2, d1kxtc1, d1kxtc2, d1kxte1, d1kxte2
        VHh against alpha-amylase
        complexed with ca, cl
      2. 2017152Domain d1kxtd_: 1kxt D: [73182]
        Other proteins in same PDB: d1kxta1, d1kxta2, d1kxtc1, d1kxtc2, d1kxte1, d1kxte2
        VHh against alpha-amylase
        complexed with ca, cl
      3. 2017153Domain d1kxtf_: 1kxt F: [73185]
        Other proteins in same PDB: d1kxta1, d1kxta2, d1kxtc1, d1kxtc2, d1kxte1, d1kxte2
        VHh against alpha-amylase
        complexed with ca, cl
    9. Domains for 1kxv:
      1. 2017140Domain d1kxvc_: 1kxv C: [73190]
        Other proteins in same PDB: d1kxva1, d1kxva2, d1kxvb1, d1kxvb2
        VHh CAB10 against alpha-amylase
      2. 2017141Domain d1kxvd_: 1kxv D: [73191]
        Other proteins in same PDB: d1kxva1, d1kxva2, d1kxvb1, d1kxvb2
        VHh CAB10 against alpha-amylase
    10. Domains for 1mel:
      1. 2017158Domain d1mela_: 1mel A: [20505]
        Other proteins in same PDB: d1mell_, d1melm_
        anti-lysozyme VHh domain
      2. 2017159Domain d1melb_: 1mel B: [20506]
        Other proteins in same PDB: d1mell_, d1melm_
        anti-lysozyme VHh domain
    11. Domains for 1mvf:
      1. 2017143Domain d1mvfa_: 1mvf A: [85141]
        Other proteins in same PDB: d1mvfd_, d1mvfe_
        VHh against MazE addiction antidote
      2. 2017144Domain d1mvfb_: 1mvf B: [85142]
        Other proteins in same PDB: d1mvfd_, d1mvfe_
        VHh against MazE addiction antidote
    12. Domain for 1op9:
    13. Domain for 1ri8:
    14. Domain for 1rjc:
    15. Domain for 1xfp:
    16. Domain for 1zmy:
    17. Domain for 1zv5:
    18. Domain for 1zvh:
    19. Domain for 1zvy:
  2. 2017166Human (Homo sapiens) [TaxId:9606] [158863] (2 PDB entries)
    1. Domains for 1za3:
      1. 2017169Domain d1za3b1: 1za3 B:1-113 [124789]
        Other proteins in same PDB: d1za3a1, d1za3a2, d1za3b2, d1za3h2, d1za3l1, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
        automatically matched to d1i3va_
      2. 2017170Domain d1za3h1: 1za3 H:1-113 [124791]
        Other proteins in same PDB: d1za3a1, d1za3a2, d1za3b2, d1za3h2, d1za3l1, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
        automatically matched to d1i3va_
    2. Domains for 3bn9:
      1. 2017167Domain d3bn9d1: 3bn9 D:1-113 [155426]
        Other proteins in same PDB: d3bn9a_, d3bn9b_, d3bn9c1, d3bn9c2, d3bn9d2, d3bn9e1, d3bn9e2, d3bn9f2
        automatically matched to d1qd0a_
        complexed with edo, so4
      2. 2017168Domain d3bn9f1: 3bn9 F:1-113 [155428]
        Other proteins in same PDB: d3bn9a_, d3bn9b_, d3bn9c1, d3bn9c2, d3bn9d2, d3bn9e1, d3bn9e2, d3bn9f2
        automatically matched to d1qd0a_
        complexed with edo, so4
  3. 2017171Llama (Lama glama) [TaxId:9844] [88565] (7 PDB entries)
    1. Domain for 1g9e:
    2. Domain for 1hcv:
    3. Domain for 1i3u:
      • 2017174Domain d1i3ua_: 1i3u A: [61636]
        dye RR1-binding VHh domain
        complexed with rr1, so4
    4. Domains for 1i3v:
      1. 2017175Domain d1i3va_: 1i3v A: [61637]
        dye RR1-binding VHh domain
      2. 2017176Domain d1i3vb_: 1i3v B: [61638]
        dye RR1-binding VHh domain
    5. Domain for 1ieh:
    6. Domain for 1qd0:
    7. Domain for 1sjv:

More info for Protein Camelid IG heavy chain variable domain, VHh from b.1.1.1: V set domains (antibody variable domain-like)

Timeline for Protein Camelid IG heavy chain variable domain, VHh from b.1.1.1: V set domains (antibody variable domain-like):

  • Protein Camelid IG heavy chain variable domain, VHh from b.1.1.1: V set domains (antibody variable domain-like) first appeared in SCOP 1.65
  • Protein Camelid IG heavy chain variable domain, VHh from b.1.1.1: V set domains (antibody variable domain-like) appears in SCOPe 2.05