Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2021582Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2022524Species Norway rat (Rattus norvegicus) [TaxId:10116] [88560] (16 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 2022537Domain d1bfob1: 1bfo B:1-121 [20311]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    2. 2022538Domain d1bfod1: 1bfo D:1-121 [20313]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    3. 2022539Domain d1bfof1: 1bfo F:1-121 [20315]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    4. 2022540Domain d1bfoh1: 1bfo H:1-121 [20317]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 2022541Domain d1c5db1: 1c5d B:1-117 [20415]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 2022542Domain d1c5dh1: 1c5d H:1-117 [20413]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 2022554Domain d1f3rb1: 1f3r B:1-123 [20416]
      Other proteins in same PDB: d1f3rb2
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
  6. Domain(s) for 1fn4:
    1. 2022551Domain d1fn4b1: 1fn4 B:1-106 [59886]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
    2. 2022552Domain d1fn4d1: 1fn4 D:1-106 [59890]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 2022526Domain d1lk3h1: 1lk3 H:1-119 [73952]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
    2. 2022527Domain d1lk3i1: 1lk3 I:1-119 [73954]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1oaq:
  9. Domain(s) for 1oar:
    1. 2022533Domain d1oarh_: 1oar H: [92709]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    2. 2022534Domain d1oari_: 1oar I: [92710]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    3. 2022535Domain d1oarj_: 1oar J: [92711]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    4. 2022536Domain d1oark_: 1oar K: [92712]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
  10. Domain(s) for 1oau:
    1. 2022529Domain d1oauh_: 1oau H: [92717]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    2. 2022530Domain d1oaui_: 1oau I: [92718]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    3. 2022531Domain d1oauj_: 1oau J: [92719]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    4. 2022532Domain d1oauk_: 1oau K: [92720]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
  11. Domain(s) for 1oax:
    1. 2022549Domain d1oaxh_: 1oax H: [92725]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
      complexed with anq
    2. 2022550Domain d1oaxj_: 1oax J: [92727]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
      complexed with anq
  12. Domain(s) for 1oay:
    1. 2022547Domain d1oayh_: 1oay H: [92733]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
      complexed with fur
    2. 2022548Domain d1oayj_: 1oay J: [92735]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
      complexed with fur
  13. Domain(s) for 1oaz:
    1. 2022555Domain d1oazh_: 1oaz H: [92743]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
    2. 2022556Domain d1oazj_: 1oaz J: [92744]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
  14. Domain(s) for 1ocw:
  15. Domain(s) for 2arj:
    1. 2022545Domain d2arjb1: 2arj B:1-113 [144831]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq_, d2arjr_
    2. 2022546Domain d2arjh1: 2arj H:1-113 [144833]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq_, d2arjr_
      automated match to d2arjb1
  16. Domain(s) for 2bjm:

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: