Lineage for Species: Rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 781740Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 782601Species Rat (Rattus norvegicus) [TaxId:10116] [88560] (16 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 782614Domain d1bfob1: 1bfo B:1-121 [20311]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    2. 782615Domain d1bfod1: 1bfo D:1-121 [20313]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    3. 782616Domain d1bfof1: 1bfo F:1-121 [20315]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    4. 782617Domain d1bfoh1: 1bfo H:1-121 [20317]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 782623Domain d1c5db1: 1c5d B:1-117 [20415]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 782624Domain d1c5dh1: 1c5d H:1-117 [20413]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 782630Domain d1f3rb1: 1f3r B:1-123 [20416]
      Other proteins in same PDB: d1f3rb2
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
      mutant
  6. Domain(s) for 1fn4:
    1. 782628Domain d1fn4b1: 1fn4 B:1-106 [59886]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
    2. 782629Domain d1fn4d1: 1fn4 D:1-106 [59890]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 782603Domain d1lk3h1: 1lk3 H:1-119 [73952]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
    2. 782604Domain d1lk3i1: 1lk3 I:1-119 [73954]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1oaq:
  9. Domain(s) for 1oar:
    1. 782610Domain d1oarh_: 1oar H: [92709]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
    2. 782611Domain d1oari_: 1oar I: [92710]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
    3. 782612Domain d1oarj_: 1oar J: [92711]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
    4. 782613Domain d1oark_: 1oar K: [92712]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
  10. Domain(s) for 1oau:
    1. 782605Domain d1oauh_: 1oau H: [92717]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
    2. 782606Domain d1oaui_: 1oau I: [92718]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
    3. 782607Domain d1oauj_: 1oau J: [92719]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
    4. 782608Domain d1oauk_: 1oau K: [92720]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
  11. Domain(s) for 1oax:
    1. 782618Domain d1oaxh_: 1oax H: [92725]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
    2. 782619Domain d1oaxj_: 1oax J: [92727]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
      complexed with anq
  12. Domain(s) for 1oay:
    1. 782620Domain d1oayh_: 1oay H: [92733]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
    2. 782621Domain d1oayj_: 1oay J: [92735]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
      complexed with fur
  13. Domain(s) for 1oaz:
    1. 782632Domain d1oazh_: 1oaz H: [92743]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
    2. 782633Domain d1oazj_: 1oaz J: [92744]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
  14. Domain(s) for 1ocw:
  15. Domain(s) for 2arj:
    1. 782625Domain d2arjb1: 2arj B:1-113 [144831]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq1, d2arjr1
    2. 782626Domain d2arjh1: 2arj H:1-113 [144833]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq1, d2arjr1
      automatically matched to 2ARJ B:1-113
  16. Domain(s) for 2bjm:

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: