Lineage for Species: Rat (Rattus norvegicus)

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 450916Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451578Species Rat (Rattus norvegicus) [TaxId:10116] [88560] (14 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus):

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 451591Domain d1bfob1: 1bfo B:1-121 [20311]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
    2. 451592Domain d1bfod1: 1bfo D:1-121 [20313]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
    3. 451593Domain d1bfof1: 1bfo F:1-121 [20315]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
    4. 451594Domain d1bfoh1: 1bfo H:1-121 [20317]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 451595Domain d1c5db1: 1c5d B:1-117 [20415]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 451596Domain d1c5dh1: 1c5d H:1-117 [20413]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 451609Domain d1f3rb1: 1f3r B:1-123 [20416]
      Other proteins in same PDB: d1f3rb2
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
  6. Domain(s) for 1fn4:
    1. 451606Domain d1fn4b1: 1fn4 B:1-106 [59886]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
    2. 451607Domain d1fn4d1: 1fn4 D:1-106 [59890]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 451580Domain d1lk3h1: 1lk3 H:1-119 [73952]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
    2. 451581Domain d1lk3i1: 1lk3 I:1-119 [73954]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1oaq:
  9. Domain(s) for 1oar:
    1. 451587Domain d1oarh_: 1oar H: [92709]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
    2. 451588Domain d1oari_: 1oar I: [92710]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
    3. 451589Domain d1oarj_: 1oar J: [92711]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
    4. 451590Domain d1oark_: 1oar K: [92712]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
  10. Domain(s) for 1oau:
    1. 451582Domain d1oauh_: 1oau H: [92717]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
    2. 451583Domain d1oaui_: 1oau I: [92718]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
    3. 451584Domain d1oauj_: 1oau J: [92719]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
    4. 451585Domain d1oauk_: 1oau K: [92720]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
  11. Domain(s) for 1oax:
    1. 451598Domain d1oaxh_: 1oax H: [92725]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
    2. Domain d1oaxi_: 1oax I: [92726]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
    3. 451600Domain d1oaxj_: 1oax J: [92727]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
    4. Domain d1oaxk_: 1oax K: [92728]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
  12. Domain(s) for 1oay:
    1. 451602Domain d1oayh_: 1oay H: [92733]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
    2. Domain d1oayi_: 1oay I: [92734]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
    3. 451604Domain d1oayj_: 1oay J: [92735]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
    4. Domain d1oayk_: 1oay K: [92736]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
  13. Domain(s) for 1oaz:
    1. 451610Domain d1oazh_: 1oaz H: [92743]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
    2. 451611Domain d1oazj_: 1oaz J: [92744]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
  14. Domain(s) for 1ocw:

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: