Lineage for Species: Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018217Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] [88558] (32 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]:

  1. Domain(s) for 1c08:
  2. Domain(s) for 1dqd:
  3. Domain(s) for 1dqj:
  4. Domain(s) for 1dqm:
  5. Domain(s) for 1dqq:
    1. 2018228Domain d1dqqb1: 1dqq B:1-113 [20421]
      Other proteins in same PDB: d1dqqa1, d1dqqa2, d1dqqb2, d1dqqc1, d1dqqc2, d1dqqd2
      part of anti-lysozyme Fab HYHEL-63
    2. 2018229Domain d1dqqd1: 1dqq D:1-113 [20423]
      Other proteins in same PDB: d1dqqa1, d1dqqa2, d1dqqb2, d1dqqc1, d1dqqc2, d1dqqd2
      part of anti-lysozyme Fab HYHEL-63
  6. Domain(s) for 1ic4:
  7. Domain(s) for 1ic5:
  8. Domain(s) for 1ic7:
  9. Domain(s) for 1j1o:
  10. Domain(s) for 1j1p:
  11. Domain(s) for 1j1x:
  12. Domain(s) for 1nak:
    1. 2018249Domain d1nakh1: 1nak H:1-113 [91753]
      Other proteins in same PDB: d1nakh2, d1naki2, d1nakl1, d1nakl2, d1nakm1, d1nakm2
      part of Fab 83.1 against HIV-1 gp120
    2. 2018250Domain d1naki1: 1nak I:1-113 [91755]
      Other proteins in same PDB: d1nakh2, d1naki2, d1nakl1, d1nakl2, d1nakm1, d1nakm2
      part of Fab 83.1 against HIV-1 gp120
  13. Domain(s) for 1nby:
  14. Domain(s) for 1nbz:
  15. Domain(s) for 1ndg:
  16. Domain(s) for 1ndm:
  17. Domain(s) for 1osp:
  18. Domain(s) for 1ua6:
  19. Domain(s) for 1uac:
  20. Domain(s) for 2dqc:
  21. Domain(s) for 2dqd:
  22. Domain(s) for 2dqe:
  23. Domain(s) for 2dqf:
    1. 2018247Domain d2dqfb1: 2dqf B:1-114 [145083]
      Other proteins in same PDB: d2dqfa_, d2dqfc_, d2dqfd_, d2dqff_
      mutant
    2. 2018248Domain d2dqfe_: 2dqf E: [145084]
      Other proteins in same PDB: d2dqfa_, d2dqfc_, d2dqfd_, d2dqff_
      automated match to d2dqfb1
      mutant
  24. Domain(s) for 2dqg:
  25. Domain(s) for 2dqh:
  26. Domain(s) for 2dqi:
  27. Domain(s) for 2dqj:
  28. Domain(s) for 3a67:
  29. Domain(s) for 3a6b:
  30. Domain(s) for 3a6c:
  31. Domain(s) for 3hfm:
  32. Domain(s) for 5ayu:

More info for Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: