Class b: All beta proteins [48724] (178 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (5 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) |
Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species) VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] [88557] (39 PDB entries) Uniprot P18532 # HV61_MOUSE Ig heavy chain V region 1B43 precursor |
Domain d1ay1h1: 1ay1 H:1-115 [20243] Other proteins in same PDB: d1ay1h2, d1ay1l1, d1ay1l2 part of Fab TP7 against Taq DNA polymerase |
Domain d1bafh1: 1baf H:1-115 [19779] Other proteins in same PDB: d1bafh2, d1bafl1, d1bafl2 part of Fab ANO2 complexed with npp |
Domain d1c12b1: 1c12 B:306-413 [20381] Other proteins in same PDB: d1c12a1, d1c12a2, d1c12b2, d1c12b3 part of antibody directed against the musk odorant traseolide complexed with trz |
Domain d1cf8h1: 1cf8 H:1-113 [20379] Other proteins in same PDB: d1cf8h2, d1cf8l1, d1cf8l2 part of catalytic Fab HA-19A4 with a polyene cyclase activity complexed with cd, haz |
Domain d1f58h1: 1f58 H:1-113 [20351] Other proteins in same PDB: d1f58h2, d1f58l1, d1f58l2 part of anti-gp120 (HIV-1) Fab 58.2 |
Domain d1f8th1: 1f8t H:1-113 [59705] Other proteins in same PDB: d1f8th2, d1f8tl1, d1f8tl2 part of anti-IL2 Fab LNKB-2 |
Domain d1f90h1: 1f90 H:1-113 [59709] Other proteins in same PDB: d1f90h2, d1f90l1, d1f90l2 part of anti-IL2 Fab LNKB-2 |
Domain d1hq4b1: 1hq4 B:1-113 [83623] Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2 part of catalytic Fab HA-19A4 with a polyene cyclase activity complexed with cd |
Domain d1hq4d1: 1hq4 D:1-113 [83627] Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2 part of catalytic Fab HA-19A4 with a polyene cyclase activity complexed with cd |
Domain d1kb9j_: 1kb9 J: [77325] Other proteins in same PDB: d1kb9a1, d1kb9a2, d1kb9b1, d1kb9b2, d1kb9c1, d1kb9c2, d1kb9d1, d1kb9d2, d1kb9e1, d1kb9e2, d1kb9f_, d1kb9g_, d1kb9h_, d1kb9i_, d1kb9k_ part of Fv against Rieske protein from the yeast cytochrome bc1 complex complexed with cdl, fes, hem, pcf, pef, pie, sma, umq, uq6 |
Domain d1kc5h1: 1kc5 H:1-116 [72294] Other proteins in same PDB: d1kc5h2, d1kc5l1, d1kc5l2 part of anti-hepatitis B Fab pc287; complex with ps1 peptide |
Domain d1kcrh1: 1kcr H:1-116 [72303] Other proteins in same PDB: d1kcrh2, d1kcrl1, d1kcrl2 part of anti-hepatitis B Fab pc283; complex with ps1 peptide |
Domain d1kcsh1: 1kcs H:1-116 [72307] Other proteins in same PDB: d1kcsh2, d1kcsl1, d1kcsl2 part of anti-hepatitis B Fab pc282; complex with ps1 peptide |
Domain d1kcuh1: 1kcu H:1-116 [72311] Other proteins in same PDB: d1kcuh2, d1kcul1, d1kcul2 part of anti-hepatitis B Fab pc287 |
Domain d1kcvh1: 1kcv H:1-116 [72315] Other proteins in same PDB: d1kcvh2, d1kcvl1, d1kcvl2 part of anti-hepatitis B Fab pc282 |
Domain d1kenh1: 1ken H:1-120 [72379] Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2 part of Fab against influenza virus hemagglutinin |
Domain d1kent1: 1ken T:1-120 [72383] Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2 part of Fab against influenza virus hemagglutinin |
Domain d1kyoj_: 1kyo J: [73262] Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_ part of Fv against Rieske protein from the yeast cytochrome bc1 complex complexed with fes, hem, sma |
Domain d1kyou_: 1kyo U: [73277] Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_ part of Fv against Rieske protein from the yeast cytochrome bc1 complex complexed with fes, hem, sma |
Domain d1ncwh1: 1ncw H:1-113 [85555] Other proteins in same PDB: d1ncwh2, d1ncwl1, d1ncwl2 part of cationic cyclization catalytic Fab 4C6 complexed with bez, gol |
Domain d1nd0b1: 1nd0 B:1-113 [85561] Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2 part of cationic cyclization catalytic Fab 4C6 complexed with dp4, so4 |
Domain d1nd0d1: 1nd0 D:1-113 [85565] Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2 part of cationic cyclization catalytic Fab 4C6 complexed with dp4, so4 |
Domain d1nd0f1: 1nd0 F:1-113 [85569] Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2 part of cationic cyclization catalytic Fab 4C6 complexed with dp4, so4 |
Domain d1nd0h1: 1nd0 H:1-113 [85573] Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2 part of cationic cyclization catalytic Fab 4C6 complexed with dp4, so4 |
Domain d1nsnh1: 1nsn H:1-114 [20071] Other proteins in same PDB: d1nsnh2, d1nsnl1, d1nsnl2, d1nsns_ part of Fab N10 |
Domain d1orqb1: 1orq B:1-118 [87346] Other proteins in same PDB: d1orqa1, d1orqa2, d1orqb2, d1orqc_ part of anti-VD potassium channel KVAP Fab 6E1 complexed with cd, k |
Domain d1p84j_: 1p84 J: [87864] Other proteins in same PDB: d1p84a1, d1p84a2, d1p84b1, d1p84b2, d1p84c1, d1p84c2, d1p84d1, d1p84d2, d1p84e1, d1p84e2, d1p84f_, d1p84g_, d1p84h_, d1p84i_, d1p84k_ part of Fv against Rieske protein from the yeast cytochrome bc1 complex complexed with 3pe, 3ph, cdl, dbt, fes, hem, pc1, umq, uq6 |
Domain d1ru9h1: 1ru9 H:1-113 [97851] Other proteins in same PDB: d1ru9h2, d1ru9l1, d1ru9l2 part of cationic cyclization catalytic Fab 4C6 complexed with act, bez, gol |
Domain d1ruah1: 1rua H:1-113 [97855] Other proteins in same PDB: d1ruah2, d1rual1, d1rual2 part of cationic cyclization catalytic Fab 4C6 complexed with act, bez, gol |
Domain d1rukh1: 1ruk H:1-113 [97859] Other proteins in same PDB: d1rukh2, d1rukl1, d1rukl2 part of cationic cyclization catalytic Fab 4C6 complexed with act, bez, gol |
Domain d1rulh1: 1rul H:1-113 [97863] Other proteins in same PDB: d1rulh2, d1rull1, d1rull2 part of cationic cyclization catalytic Fab 4C6 complexed with act, bez, gol |
Domain d1rumh1: 1rum H:1-113 [97867] Other proteins in same PDB: d1rumh2, d1ruml1, d1ruml2 part of cationic cyclization catalytic Fab 4C6 complexed with bez, gol |
Domain d1ruph1: 1rup H:1-113 [97871] Other proteins in same PDB: d1ruph2, d1rupl1, d1rupl2 part of cationic cyclization catalytic Fab 4C6 complexed with bez, gol |
Domain d1s5ih1: 1s5i H:1-113 [105272] Other proteins in same PDB: d1s5ih2, d1s5il1, d1s5il2 MQ P18532 P01868 # natural 'chimera' |
Domain d2f58h1: 2f58 H:1-113 [20355] Other proteins in same PDB: d2f58h2, d2f58l1, d2f58l2 part of anti-gp120 (HIV-1) Fab 58.2 complexed with arn |
Domain d32c2b1: 32c2 B:1-119 [20439] Other proteins in same PDB: d32c2a1, d32c2a2, d32c2b2 part of the cytochrome P450-arom activity suppressing Fab 32C2 |
Domain d3cx5j_: 3cx5 J: [157090] Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_ automated match to d1ezvx_ complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq |
Domain d3cx5u_: 3cx5 U: [157106] Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_ automated match to d1ezvx_ complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq |
Domain d3cxhj_: 3cxh J: [157123] Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_ automated match to d1ezvx_ complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq |
Domain d3cxhu_: 3cxh U: [157139] Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_ automated match to d1ezvx_ complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq |
Domain d3f58h1: 3f58 H:1-113 [20353] Other proteins in same PDB: d3f58h2, d3f58l1, d3f58l2 part of anti-gp120 (HIV-1) Fab 58.2 mutant |
Timeline for Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: