Lineage for Species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2352459Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2352460Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2352461Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2352672Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2353538Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] [88557] (39 PDB entries)
    Uniprot P18532 # HV61_MOUSE Ig heavy chain V region 1B43 precursor

PDB entries in Species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1c12:
  5. Domain(s) for 1cf8:
  6. Domain(s) for 1ezv:
  7. Domain(s) for 1f58:
  8. Domain(s) for 1f8t:
  9. Domain(s) for 1f90:
  10. Domain(s) for 1hq4:
    1. 2353569Domain d1hq4b1: 1hq4 B:1-113 [83623]
      Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
    2. 2353570Domain d1hq4d1: 1hq4 D:1-113 [83627]
      Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  11. Domain(s) for 1kb9:
  12. Domain(s) for 1kc5:
  13. Domain(s) for 1kcr:
  14. Domain(s) for 1kcs:
  15. Domain(s) for 1kcu:
  16. Domain(s) for 1kcv:
  17. Domain(s) for 1ken:
    1. 2353582Domain d1kenh1: 1ken H:1-120 [72379]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 2353583Domain d1kent1: 1ken T:1-120 [72383]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2
      part of Fab against influenza virus hemagglutinin
  18. Domain(s) for 1kyo:
    1. 2353574Domain d1kyoj_: 1kyo J: [73262]
      Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, sma
    2. 2353575Domain d1kyou_: 1kyo U: [73277]
      Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, sma
  19. Domain(s) for 1ncw:
  20. Domain(s) for 1nd0:
    1. 2353564Domain d1nd0b1: 1nd0 B:1-113 [85561]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    2. 2353565Domain d1nd0d1: 1nd0 D:1-113 [85565]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    3. 2353566Domain d1nd0f1: 1nd0 F:1-113 [85569]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    4. 2353567Domain d1nd0h1: 1nd0 H:1-113 [85573]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
  21. Domain(s) for 1nsn:
  22. Domain(s) for 1orq:
  23. Domain(s) for 1ors:
  24. Domain(s) for 1p84:
  25. Domain(s) for 1ru9:
  26. Domain(s) for 1rua:
  27. Domain(s) for 1ruk:
  28. Domain(s) for 1rul:
  29. Domain(s) for 1rum:
  30. Domain(s) for 1rup:
  31. Domain(s) for 1s5i:
  32. Domain(s) for 2a0l:
    1. 2353584Domain d2a0ld1: 2a0l D:1-116 [125957]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0lc1, d2a0le1
      automatically matched to d1orsb1
      complexed with k
    2. 2353585Domain d2a0lf1: 2a0l F:1-116 [125959]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0lc1, d2a0le1
      automatically matched to d1orsb1
      complexed with k
  33. Domain(s) for 2f58:
  34. Domain(s) for 2ibz:
  35. Domain(s) for 32c2:
  36. Domain(s) for 3cx5:
    1. 2353549Domain d3cx5j_: 3cx5 J: [157090]
      Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
    2. 2353550Domain d3cx5u_: 3cx5 U: [157106]
      Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f_, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q_, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
  37. Domain(s) for 3cxh:
    1. 2353561Domain d3cxhj_: 3cxh J: [157123]
      Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq
    2. 2353562Domain d3cxhu_: 3cxh U: [157139]
      Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf_, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq_, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq
  38. Domain(s) for 3f58:
  39. Domain(s) for 4pd4:

More info for Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: