Lineage for Species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018153Species Mouse (Mus musculus), cluster 6 [TaxId:10090] [88556] (12 PDB entries)
    SQ NA # part of Fab 28 against HIV-1 RT

PDB entries in Species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]:

  1. Domain(s) for 1etz:
    1. 2018154Domain d1etzb1: 1etz B:1-126 [20481]
      Other proteins in same PDB: d1etza1, d1etza2, d1etzb2, d1etzh2, d1etzl1, d1etzl2
      part of anti-sweetener Fab NC10.14
      complexed with gas
    2. 2018155Domain d1etzh1: 1etz H:1-126 [20479]
      Other proteins in same PDB: d1etza1, d1etza2, d1etzb2, d1etzh2, d1etzl1, d1etzl2
      part of anti-sweetener Fab NC10.14
      complexed with gas
  2. Domain(s) for 1ggb:
  3. Domain(s) for 1ggc:
  4. Domain(s) for 1ggi:
    1. 2018158Domain d1ggih1: 1ggi H:1-112 [19877]
      Other proteins in same PDB: d1ggih2, d1ggij2, d1ggil1, d1ggil2, d1ggim1, d1ggim2
      part of Fab 50.1
    2. 2018159Domain d1ggij1: 1ggi J:1-112 [19879]
      Other proteins in same PDB: d1ggih2, d1ggij2, d1ggil1, d1ggil2, d1ggim1, d1ggim2
      part of Fab 50.1
  5. Domain(s) for 1hys:
  6. Domain(s) for 1j5o:
  7. Domain(s) for 1jrh:
  8. Domain(s) for 1n5y:
  9. Domain(s) for 1n6q:
  10. Domain(s) for 1r0a:
  11. Domain(s) for 1t03:
  12. Domain(s) for 2hmi:

More info for Species Mouse (Mus musculus), cluster 6 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 6 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: