Class b: All beta proteins [48724] (126 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (4 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins) |
Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species) VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 5 [TaxId:10090] [88555] (31 PDB entries) |
Domain d1a2yb_: 1a2y B: [19927] Other proteins in same PDB: d1a2ya_, d1a2yc_ part of Fv D1.3 complexed with po4; mutant |
Domain d1a7nh_: 1a7n H: [19941] Other proteins in same PDB: d1a7nl_ part of Fv D1.3 mutant |
Domain d1a7oh_: 1a7o H: [19943] Other proteins in same PDB: d1a7ol_ part of Fv D1.3 mutant |
Domain d1a7ph_: 1a7p H: [19951] Other proteins in same PDB: d1a7pl_ part of Fv D1.3 complexed with acy; mutant |
Domain d1a7qh_: 1a7q H: [19955] Other proteins in same PDB: d1a7ql_ part of Fv D1.3 mutant |
Domain d1a7rh_: 1a7r H: [19945] Other proteins in same PDB: d1a7rl_ part of Fv D1.3 mutant |
Domain d1dl7h_: 1dl7 H: [20499] Other proteins in same PDB: d1dl7l_ part of Fv M3C65; conflict: annotated in PDB as human protein complexed with nch |
Domain d1dvfb_: 1dvf B: [19953] Other proteins in same PDB: d1dvfa_, d1dvfc_ part of Fv D1.3 CASP1 complexed with zn |
Domain d1fdlh1: 1fdl H:1-116 [19961] Other proteins in same PDB: d1fdlh2, d1fdll1, d1fdll2, d1fdly_ part of Fab D1.3 |
Domain d1fe8h1: 1fe8 H:1-115 [59786] Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2 |
Domain d1fe8i1: 1fe8 I:1-115 [59788] Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2 |
Domain d1fe8j1: 1fe8 J:1-115 [59790] Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2 part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain complexed with cac, fuc, nag |
Domain d1fnsh1: 1fns H:215-336 [20289] Other proteins in same PDB: d1fnsa_, d1fnsh2, d1fnsl1, d1fnsl2 part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function mutant |
Domain d1g7hb_: 1g7h B: [19949] Other proteins in same PDB: d1g7ha_, d1g7hc_ part of Fv D1.3 mutant |
Domain d1g7ib_: 1g7i B: [19935] Other proteins in same PDB: d1g7ia_, d1g7ic_ part of Fv D1.3 complexed with po4; mutant |
Domain d1g7jb_: 1g7j B: [19933] Other proteins in same PDB: d1g7ja_, d1g7jc_ part of Fv D1.3 mutant |
Domain d1g7lb_: 1g7l B: [19959] Other proteins in same PDB: d1g7la_, d1g7lc_ part of Fv D1.3 mutant |
Domain d1g7mb_: 1g7m B: [19937] Other proteins in same PDB: d1g7ma_, d1g7mc_ part of Fv D1.3 mutant |
Domain d1gigh1: 1gig H:1-120 [19911] Other proteins in same PDB: d1gigh2, d1gigl1, d1gigl2 part of Fab HC19 |
Domain d1ibgh1: 1ibg H:2-113 [20049] Other proteins in same PDB: d1ibgh2, d1ibgl1, d1ibgl2 part of Fab 40-50 complexed with cu, obn |
Domain d1kipb_: 1kip B: [19957] Other proteins in same PDB: d1kipa_, d1kipc_ part of Fv D1.3 mutant |
Domain d1kiqb_: 1kiq B: [19939] Other proteins in same PDB: d1kiqa_, d1kiqc_ part of Fv D1.3 mutant |
Domain d1kirb_: 1kir B: [19947] Other proteins in same PDB: d1kira_, d1kirc_ part of Fv D1.3 mutant |
Domain d1nldh1: 1nld H:1-112 [20111] Other proteins in same PDB: d1nldh2, d1nldl1, d1nldl2 part of Fab 1583 |
Domain d1oakh1: 1oak H:215-336 [20291] Other proteins in same PDB: d1oaka_, d1oakh2, d1oakl1, d1oakl2 part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function |
Domain d1vfab_: 1vfa B: [19929] Other proteins in same PDB: d1vfaa_ part of Fv D1.3 |
Domain d1vfbb_: 1vfb B: [19931] Other proteins in same PDB: d1vfba_, d1vfbc_ part of Fv D1.3 |
Domain d2virb1: 2vir B:1-120 [19917] Other proteins in same PDB: d2vira1, d2vira2, d2virb2, d2virc_ part of Fab HC19 complexed with zn |
Domain d2visb1: 2vis B:1-120 [19913] Other proteins in same PDB: d2visa1, d2visa2, d2visb2, d2visc_ part of Fab HC19 complexed with nag, zn; mutant |
Domain d2vitb1: 2vit B:1-120 [19915] Other proteins in same PDB: d2vita1, d2vita2, d2vitb2, d2vitc_ part of Fab HC19 complexed with zn; mutant |
Domain d43c9b_: 43c9 B: [20387] Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_ |
Domain d43c9d_: 43c9 D: [20389] Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_ |
Domain d43c9f_: 43c9 F: [20391] Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_ |
Domain d43c9h_: 43c9 H: [20393] Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_ part of sterolytic and amidolytic Fv 43c9 |
Domain d43cab_: 43ca B: [20395] Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_ |
Domain d43cad_: 43ca D: [20397] Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_ |
Domain d43caf_: 43ca F: [20399] Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_ |
Domain d43cah_: 43ca H: [20401] Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_ part of sterolytic and amidolytic Fv 43c9 complexed with npo |
Timeline for Species Mouse (Mus musculus), cluster 5 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: