Lineage for Species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018105Species Mouse (Mus musculus), cluster 5 [TaxId:10090] [88555] (36 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]:

  1. Domain(s) for 1a2y:
  2. Domain(s) for 1a7n:
  3. Domain(s) for 1a7o:
  4. Domain(s) for 1a7p:
  5. Domain(s) for 1a7q:
  6. Domain(s) for 1a7r:
  7. Domain(s) for 1cic:
  8. Domain(s) for 1dl7:
    • 2018144Domain d1dl7h_: 1dl7 H: [20499]
      Other proteins in same PDB: d1dl7l_
      part of Fv M3C65; conflict: annotated in PDB as human protein
      complexed with nch
  9. Domain(s) for 1dvf:
  10. Domain(s) for 1fdl:
  11. Domain(s) for 1fe8:
    1. 2018124Domain d1fe8h1: 1fe8 H:1-115 [59786]
      Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2
      part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
      complexed with cac, nag
    2. 2018125Domain d1fe8i1: 1fe8 I:1-115 [59788]
      Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2
      part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
      complexed with cac, nag
    3. 2018126Domain d1fe8j1: 1fe8 J:1-115 [59790]
      Other proteins in same PDB: d1fe8a_, d1fe8b_, d1fe8c_, d1fe8h2, d1fe8i2, d1fe8j2, d1fe8l1, d1fe8l2, d1fe8m1, d1fe8m2, d1fe8n1, d1fe8n2
      part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
      complexed with cac, nag
  12. Domain(s) for 1fns:
  13. Domain(s) for 1g7h:
  14. Domain(s) for 1g7i:
  15. Domain(s) for 1g7j:
  16. Domain(s) for 1g7l:
  17. Domain(s) for 1g7m:
  18. Domain(s) for 1gig:
  19. Domain(s) for 1ibg:
  20. Domain(s) for 1kip:
  21. Domain(s) for 1kiq:
  22. Domain(s) for 1kir:
  23. Domain(s) for 1nc2:
    1. 2018127Domain d1nc2b1: 1nc2 B:1-120 [91783]
      Other proteins in same PDB: d1nc2a1, d1nc2a2, d1nc2b2, d1nc2c1, d1nc2c2, d1nc2d2
      part of Fab 2d12.5
      complexed with cl, doe, nag, yt3
    2. 2018128Domain d1nc2d1: 1nc2 D:1-120 [91787]
      Other proteins in same PDB: d1nc2a1, d1nc2a2, d1nc2b2, d1nc2c1, d1nc2c2, d1nc2d2
      part of Fab 2d12.5
      complexed with cl, doe, nag, yt3
  24. Domain(s) for 1nc4:
    1. 2018134Domain d1nc4b1: 1nc4 B:1-120 [91791]
      Other proteins in same PDB: d1nc4a1, d1nc4a2, d1nc4b2, d1nc4c1, d1nc4c2, d1nc4d2
      part of Fab 2d12.5
      complexed with cl, dof, gd3, nag
    2. 2018135Domain d1nc4d1: 1nc4 D:1-120 [91795]
      Other proteins in same PDB: d1nc4a1, d1nc4a2, d1nc4b2, d1nc4c1, d1nc4c2, d1nc4d2
      part of Fab 2d12.5
      complexed with cl, dof, gd3, nag
  25. Domain(s) for 1nld:
  26. Domain(s) for 1oak:
  27. Domain(s) for 1p4b:
  28. Domain(s) for 1p4i:
  29. Domain(s) for 1t4k:
    1. 2018151Domain d1t4kb1: 1t4k B:1-113 [112237]
      Other proteins in same PDB: d1t4ka1, d1t4ka2, d1t4kb2, d1t4kc1, d1t4kc2, d1t4kd2
      MQ P018119 P01868 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
    2. 2018152Domain d1t4kd1: 1t4k D:1-113 [112241]
      Other proteins in same PDB: d1t4ka1, d1t4ka2, d1t4kb2, d1t4kc1, d1t4kc2, d1t4kd2
      MQ P018119 P01868 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
  30. Domain(s) for 1vfa:
  31. Domain(s) for 1vfb:
  32. Domain(s) for 2vir:
  33. Domain(s) for 2vis:
  34. Domain(s) for 2vit:
  35. Domain(s) for 43c9:
    1. 2018130Domain d43c9b_: 43c9 B: [20387]
      Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_
      part of sterolytic and amidolytic Fv 43c9
    2. 2018131Domain d43c9d_: 43c9 D: [20389]
      Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_
      part of sterolytic and amidolytic Fv 43c9
    3. 2018132Domain d43c9f_: 43c9 F: [20391]
      Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_
      part of sterolytic and amidolytic Fv 43c9
    4. 2018133Domain d43c9h_: 43c9 H: [20393]
      Other proteins in same PDB: d43c9a_, d43c9c_, d43c9e_, d43c9g_
      part of sterolytic and amidolytic Fv 43c9
  36. Domain(s) for 43ca:
    1. 2018136Domain d43cab_: 43ca B: [20395]
      Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    2. 2018137Domain d43cad_: 43ca D: [20397]
      Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    3. 2018138Domain d43caf_: 43ca F: [20399]
      Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    4. 2018139Domain d43cah_: 43ca H: [20401]
      Other proteins in same PDB: d43caa_, d43cac_, d43cae_, d43cag_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo

More info for Species Mouse (Mus musculus), cluster 5 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 5 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: