Lineage for Species: Mouse (Mus musculus), cluster 4

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287575Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88554] (29 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 4:

  1. Domain(s) for 1a4j:
    1. 287590Domain d1a4jb1: 1a4j B:1-119 [20233]
      Other proteins in same PDB: d1a4ja1, d1a4ja2, d1a4jb2, d1a4jh2, d1a4jl1, d1a4jl2
      part of humanized Diels-Alder catalytic Fab
    2. 287591Domain d1a4jh1: 1a4j H:1-119 [20231]
      Other proteins in same PDB: d1a4ja1, d1a4ja2, d1a4jb2, d1a4jh2, d1a4jl1, d1a4jl2
  2. Domain(s) for 1a4k:
    1. 287596Domain d1a4kb1: 1a4k B:1-119 [20237]
      Other proteins in same PDB: d1a4ka1, d1a4ka2, d1a4kb2, d1a4kh2, d1a4kl1, d1a4kl2
      part of humanized Diels-Alder catalytic Fab
      complexed with cd, fra
    2. 287597Domain d1a4kh1: 1a4k H:1-119 [20235]
      Other proteins in same PDB: d1a4ka1, d1a4ka2, d1a4kb2, d1a4kh2, d1a4kl1, d1a4kl2
  3. Domain(s) for 1bj1:
    1. 287586Domain d1bj1h1: 1bj1 H:1-123 [20323]
      Other proteins in same PDB: d1bj1h2, d1bj1j1, d1bj1j2, d1bj1k2, d1bj1l1, d1bj1l2, d1bj1v_, d1bj1w_
    2. 287587Domain d1bj1k1: 1bj1 K:1-123 [20325]
      Other proteins in same PDB: d1bj1h2, d1bj1j1, d1bj1j2, d1bj1k2, d1bj1l1, d1bj1l2, d1bj1v_, d1bj1w_
      part of humanized Fab-12 neutralizing VEGF
      complexed with so4
  4. Domain(s) for 1c1e:
  5. Domain(s) for 1cl7:
  6. Domain(s) for 1cz8:
    1. 287592Domain d1cz8h1: 1cz8 H:1-123 [20327]
      Other proteins in same PDB: d1cz8h2, d1cz8l1, d1cz8l2, d1cz8v_, d1cz8w_, d1cz8x1, d1cz8x2, d1cz8y2
    2. 287593Domain d1cz8y1: 1cz8 Y:1-123 [20329]
      Other proteins in same PDB: d1cz8h2, d1cz8l1, d1cz8l2, d1cz8v_, d1cz8w_, d1cz8x1, d1cz8x2, d1cz8y2
      part of humanized Fab-12 neutralizing VEGF; affinity matured
      complexed with so4; mutant
  7. Domain(s) for 1dba:
  8. Domain(s) for 1dbb:
  9. Domain(s) for 1dbj:
  10. Domain(s) for 1dbk:
  11. Domain(s) for 1dbm:
  12. Domain(s) for 1fj1:
    1. 287600Domain d1fj1b1: 1fj1 B:1-114 [20119]
      Other proteins in same PDB: d1fj1a1, d1fj1a2, d1fj1b2, d1fj1c1, d1fj1c2, d1fj1d2, d1fj1e_, d1fj1f_
    2. 287601Domain d1fj1d1: 1fj1 D:1-114 [20121]
      Other proteins in same PDB: d1fj1a1, d1fj1a2, d1fj1b2, d1fj1c1, d1fj1c2, d1fj1d2, d1fj1e_, d1fj1f_
      part of Fab LA-2 against OspA
  13. Domain(s) for 1ghf:
  14. Domain(s) for 1i7z:
    1. 287588Domain d1i7zb1: 1i7z B:1-113 [61921]
      Other proteins in same PDB: d1i7za1, d1i7za2, d1i7zb2, d1i7zc1, d1i7zc2, d1i7zd2
    2. 287589Domain d1i7zd1: 1i7z D:1-113 [61925]
      Other proteins in same PDB: d1i7za1, d1i7za2, d1i7zb2, d1i7zc1, d1i7zc2, d1i7zd2
      part of humanized Fab GNC92H2
      complexed with coc
  15. Domain(s) for 1iai:
  16. Domain(s) for 1jgl:
  17. Domain(s) for 1jhk:
  18. Domain(s) for 1jp5:
    1. 287602Domain d1jp5a2: 1jp5 A:128-247 [67002]
      Other proteins in same PDB: d1jp5a1, d1jp5b1
    2. 287603Domain d1jp5b2: 1jp5 B:128-247 [67004]
      Other proteins in same PDB: d1jp5a1, d1jp5b1
      part of scFv 1695; complexed with the epitope peptide from HIV-1 protease
  19. Domain(s) for 1mhh:
    1. 287579Domain d1mhhb1: 1mhh B:1-113 [79121]
      Other proteins in same PDB: d1mhha1, d1mhha2, d1mhhb2, d1mhhc1, d1mhhc2, d1mhhd2, d1mhhe_, d1mhhf_
    2. 287580Domain d1mhhd1: 1mhh D:1-113 [79125]
      Other proteins in same PDB: d1mhha1, d1mhha2, d1mhhb2, d1mhhc1, d1mhhc2, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with aea, edo; mutant
  20. Domain(s) for 1n4x:
    1. 287577Domain d1n4xh_: 1n4x H: [85324]
      Other proteins in same PDB: d1n4xl_, d1n4xm_
    2. 287578Domain d1n4xi_: 1n4x I: [85325]
      Other proteins in same PDB: d1n4xl_, d1n4xm_
      part of scFv 1695
      complexed with cl
  21. Domain(s) for 1n64:
  22. Domain(s) for 1nca:
  23. Domain(s) for 1ncb:
  24. Domain(s) for 1ncc:
  25. Domain(s) for 1ncd:
  26. Domain(s) for 1nlb:
  27. Domain(s) for 1ob1:
    1. 287613Domain d1ob1b1: 1ob1 B:1-113 [86750]
      Other proteins in same PDB: d1ob1a1, d1ob1a2, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d1, d1ob1d2, d1ob1e2, d1ob1f1, d1ob1f2
    2. 287614Domain d1ob1e1: 1ob1 E:1-113 [86756]
      Other proteins in same PDB: d1ob1a1, d1ob1a2, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d1, d1ob1d2, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
      complexed with cac
  28. Domain(s) for 1tet:
  29. Domain(s) for 2dbl:

More info for Species Mouse (Mus musculus), cluster 4 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 4 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: