Class b: All beta proteins [48724] (174 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (5 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) |
Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species) VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (14 PDB entries) Uniprot P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity |
Domain d1fl3a1: 1fl3 A:2-116 [20486] Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2 part of blue fluorescent Fab 19G2 complexed with spb |
Domain d1fl3h1: 1fl3 H:2-116 [20484] Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2 part of blue fluorescent Fab 19G2 complexed with spb |
Domain d1i9ih1: 1i9i H:1-118 [71140] Other proteins in same PDB: d1i9ih2, d1i9il1, d1i9il2 part of anti-testosterone Fab |
Domain d1i9jh1: 1i9j H:1-118 [71144] Other proteins in same PDB: d1i9jh2, d1i9jl1, d1i9jl2 part of anti-testosterone Fab complexed with tes |
Domain d1jguh1: 1jgu H:1-113 [66688] Other proteins in same PDB: d1jguh2, d1jgul1, d1jgul2 part of catalytic Fab 1D4 complexed with hbc, oh |
Domain d1jgvh1: 1jgv H:1-113 [66692] Other proteins in same PDB: d1jgvh2, d1jgvl1, d1jgvl2 part of catalytic Fab 1D4 |
Domain d1kfah1: 1kfa H:2-121 [77361] Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2 part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein complexed with ga4 |
Domain d1kfai1: 1kfa I:3-121 [77363] Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2 part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein complexed with ga4 |
Domain d1l7th1: 1l7t H:1-118 [77799] Other proteins in same PDB: d1l7th2, d1l7tl1, d1l7tl2 part of anti-testosterone Fab 77 |
Domain d1lo0h1: 1lo0 H:1-119 [74115] Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with bc1 |
Domain d1lo0y1: 1lo0 Y:1-119 [74121] Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with bc1 |
Domain d1lo2h1: 1lo2 H:1-119 [74123] Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with ox1 |
Domain d1lo2y1: 1lo2 Y:1-119 [74129] Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with ox1 |
Domain d1lo3h1: 1lo3 H:1-119 [74131] Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with an1 |
Domain d1lo3y1: 1lo3 Y:1-119 [74137] Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2 part of retro Diels-Alder catalytic Fab 9D9 complexed with an1 |
Domain d1lo4h1: 1lo4 H:1-118 [74139] Other proteins in same PDB: d1lo4h2, d1lo4l1, d1lo4l2 part of retro Diels-Alder catalytic Fab 9D9 |
Domain d1ub5a1: 1ub5 A:1-116 [99143] Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2 part of blue fluorescent Fab 19G2 part of anti-testosterone Fab 77 complexed with spb |
Domain d1ub5h1: 1ub5 H:1-116 [99147] Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2 part of blue fluorescent Fab 19G2 part of anti-testosterone Fab 77 complexed with spb |
Domain d1ub6a1: 1ub6 A:2-116 [99151] Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2 part of blue fluorescent Fab 19G2 |
Domain d1ub6h1: 1ub6 H:2-116 [99155] Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2 part of blue fluorescent Fab 19G2 |
Domain d1vpoh1: 1vpo H:1-118 [113970] Other proteins in same PDB: d1vpoh2, d1vpol1, d1vpol2 MQ P18527 P01863 # natural chimera; anti-testosterone antibody (Fab) complexed with tes |
Timeline for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: