Lineage for Species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 781740Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 782061Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (14 PDB entries)
    Uniprot P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity

PDB entries in Species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]:

  1. Domain(s) for 1fl3:
    1. 782076Domain d1fl3a1: 1fl3 A:2-116 [20486]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 782077Domain d1fl3h1: 1fl3 H:2-116 [20484]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
  2. Domain(s) for 1i9i:
  3. Domain(s) for 1i9j:
  4. Domain(s) for 1jgu:
  5. Domain(s) for 1jgv:
  6. Domain(s) for 1kfa:
    1. 782079Domain d1kfah1: 1kfa H:2-121 [77361]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
    2. 782080Domain d1kfai1: 1kfa I:3-121 [77363]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
  7. Domain(s) for 1l7t:
  8. Domain(s) for 1lo0:
    1. 782067Domain d1lo0h1: 1lo0 H:1-119 [74115]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
    2. 782068Domain d1lo0y1: 1lo0 Y:1-119 [74121]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
  9. Domain(s) for 1lo2:
    1. 782069Domain d1lo2h1: 1lo2 H:1-119 [74123]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
    2. 782070Domain d1lo2y1: 1lo2 Y:1-119 [74129]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
  10. Domain(s) for 1lo3:
    1. 782072Domain d1lo3h1: 1lo3 H:1-119 [74131]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
    2. 782073Domain d1lo3y1: 1lo3 Y:1-119 [74137]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
  11. Domain(s) for 1lo4:
  12. Domain(s) for 1ub5:
    1. 782065Domain d1ub5a1: 1ub5 A:1-116 [99143]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
      part of blue fluorescent Fab 19G2
      part of anti-testosterone Fab 77
      complexed with spb
    2. 782066Domain d1ub5h1: 1ub5 H:1-116 [99147]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
      part of blue fluorescent Fab 19G2
      part of anti-testosterone Fab 77
  13. Domain(s) for 1ub6:
    1. 782074Domain d1ub6a1: 1ub6 A:2-116 [99151]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
      part of blue fluorescent Fab 19G2
    2. 782075Domain d1ub6h1: 1ub6 H:2-116 [99155]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
      part of blue fluorescent Fab 19G2
  14. Domain(s) for 1vpo:

More info for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: