Lineage for Species: Mouse (Mus musculus), cluster 2.1

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 546556Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 546744Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (16 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 2.1:

  1. Domain(s) for 1fl3:
    1. 546761Domain d1fl3a1: 1fl3 A:2-116 [20486]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 546762Domain d1fl3h1: 1fl3 H:2-116 [20484]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
  2. Domain(s) for 1hyx:
  3. Domain(s) for 1hyy:
  4. Domain(s) for 1i9i:
  5. Domain(s) for 1i9j:
  6. Domain(s) for 1jgu:
  7. Domain(s) for 1jgv:
  8. Domain(s) for 1kfa:
    1. 546765Domain d1kfah1: 1kfa H:2-121 [77361]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
    2. 546766Domain d1kfai1: 1kfa I:3-121 [77363]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
  9. Domain(s) for 1l7t:
  10. Domain(s) for 1lo0:
    1. 546749Domain d1lo0h1: 1lo0 H:1-119 [74115]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
    2. 546750Domain d1lo0y1: 1lo0 Y:1-119 [74121]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
  11. Domain(s) for 1lo2:
    1. 546751Domain d1lo2h1: 1lo2 H:1-119 [74123]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
    2. 546752Domain d1lo2y1: 1lo2 Y:1-119 [74129]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
  12. Domain(s) for 1lo3:
    1. 546756Domain d1lo3h1: 1lo3 H:1-119 [74131]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
    2. 546757Domain d1lo3y1: 1lo3 Y:1-119 [74137]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
  13. Domain(s) for 1lo4:
  14. Domain(s) for 1ub5:
    1. 546754Domain d1ub5a1: 1ub5 A:1-116 [99143]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
      part of blue fluorescent Fab 19G2
      complexed with spb
      part of anti-testosterone Fab 77
    2. 546755Domain d1ub5h1: 1ub5 H:1-116 [99147]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
  15. Domain(s) for 1ub6:
    1. 546759Domain d1ub6a1: 1ub6 A:2-116 [99151]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
      part of blue fluorescent Fab 19G2
    2. 546760Domain d1ub6h1: 1ub6 H:2-116 [99155]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
  16. Domain(s) for 1vpo:

More info for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: