Lineage for Species: Mouse (Mus musculus), cluster 2.1

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287296Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (14 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 2.1:

  1. Domain(s) for 1fl3:
    1. 287309Domain d1fl3a1: 1fl3 A:2-116 [20486]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 287310Domain d1fl3h1: 1fl3 H:2-116 [20484]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
  2. Domain(s) for 1hyx:
  3. Domain(s) for 1hyy:
  4. Domain(s) for 1i9i:
  5. Domain(s) for 1i9j:
  6. Domain(s) for 1jgu:
  7. Domain(s) for 1jgv:
  8. Domain(s) for 1kfa:
    1. 287314Domain d1kfah1: 1kfa H:2-121 [77361]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
    2. 287315Domain d1kfai1: 1kfa I:3-121 [77363]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
  9. Domain(s) for 1l7s:
  10. Domain(s) for 1l7t:
  11. Domain(s) for 1lo0:
    1. 287300Domain d1lo0h1: 1lo0 H:1-119 [74115]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
    2. 287301Domain d1lo0y1: 1lo0 Y:1-119 [74121]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
  12. Domain(s) for 1lo2:
    1. 287302Domain d1lo2h1: 1lo2 H:1-119 [74123]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
    2. 287303Domain d1lo2y1: 1lo2 Y:1-119 [74129]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
  13. Domain(s) for 1lo3:
    1. 287307Domain d1lo3h1: 1lo3 H:1-119 [74131]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
    2. 287308Domain d1lo3y1: 1lo3 Y:1-119 [74137]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
  14. Domain(s) for 1lo4:

More info for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: