Lineage for Species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2017670Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] [88549] (15 PDB entries)
    Uniprot P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity

PDB entries in Species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]:

  1. Domain(s) for 1fl3:
    1. 2017686Domain d1fl3a1: 1fl3 A:2-116 [20486]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 2017687Domain d1fl3h1: 1fl3 H:2-116 [20484]
      Other proteins in same PDB: d1fl3a2, d1fl3b1, d1fl3b2, d1fl3h2, d1fl3l1, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
  2. Domain(s) for 1i9i:
  3. Domain(s) for 1i9j:
  4. Domain(s) for 1jgu:
  5. Domain(s) for 1jgv:
  6. Domain(s) for 1kfa:
    1. 2017690Domain d1kfah1: 1kfa H:2-121 [77361]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
    2. 2017691Domain d1kfai1: 1kfa I:3-121 [77363]
      Other proteins in same PDB: d1kfah2, d1kfai2, d1kfal1, d1kfal2, d1kfam1, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
  7. Domain(s) for 1l7s:
  8. Domain(s) for 1l7t:
  9. Domain(s) for 1lo0:
    1. 2017673Domain d1lo0h1: 1lo0 H:1-119 [74115]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
    2. 2017674Domain d1lo0y1: 1lo0 Y:1-119 [74121]
      Other proteins in same PDB: d1lo0h2, d1lo0l1, d1lo0l2, d1lo0x1, d1lo0x2, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
  10. Domain(s) for 1lo2:
    1. 2017675Domain d1lo2h1: 1lo2 H:1-119 [74123]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
    2. 2017676Domain d1lo2y1: 1lo2 Y:1-119 [74129]
      Other proteins in same PDB: d1lo2h2, d1lo2l1, d1lo2l2, d1lo2x1, d1lo2x2, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
  11. Domain(s) for 1lo3:
    1. 2017681Domain d1lo3h1: 1lo3 H:1-119 [74131]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
    2. 2017682Domain d1lo3y1: 1lo3 Y:1-119 [74137]
      Other proteins in same PDB: d1lo3h2, d1lo3l1, d1lo3l2, d1lo3x1, d1lo3x2, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
  12. Domain(s) for 1lo4:
  13. Domain(s) for 1ub5:
    1. 2017678Domain d1ub5a1: 1ub5 A:1-116 [99143]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
      part of blue fluorescent Fab 19G2
      part of anti-testosterone Fab 77
      complexed with spb
    2. 2017679Domain d1ub5h1: 1ub5 H:1-116 [99147]
      Other proteins in same PDB: d1ub5a2, d1ub5b1, d1ub5b2, d1ub5h2, d1ub5l1, d1ub5l2
      part of blue fluorescent Fab 19G2
      part of anti-testosterone Fab 77
      complexed with spb
  14. Domain(s) for 1ub6:
    1. 2017684Domain d1ub6a1: 1ub6 A:2-116 [99151]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
      part of blue fluorescent Fab 19G2
    2. 2017685Domain d1ub6h1: 1ub6 H:2-116 [99155]
      Other proteins in same PDB: d1ub6a2, d1ub6b1, d1ub6b2, d1ub6h2, d1ub6l1, d1ub6l2
      part of blue fluorescent Fab 19G2
  15. Domain(s) for 1vpo:

More info for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 2.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: