Lineage for Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 781740Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 781998Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (47 PDB entries)
    Uniprot P01796 #
    HV27_MOUSE Ig heavy chain V-III region A4
    Uniprot P01796 # ! HV27_MOUSE Ig heavy chain V-III region A4

PDB entries in Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]:

  1. Domain(s) for 1aif:
    1. 782055Domain d1aifb1: 1aif B:1-121 [20077]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
    2. 782056Domain d1aifh1: 1aif H:1-121 [20079]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
  2. Domain(s) for 1axt:
  3. Domain(s) for 1cbv:
  4. Domain(s) for 1ck0:
  5. Domain(s) for 1clo:
  6. Domain(s) for 1dlf:
  7. Domain(s) for 1fl5:
    1. 782020Domain d1fl5b1: 1fl5 B:1-113 [65017]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
    2. 782021Domain d1fl5h1: 1fl5 H:1-113 [65019]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
  8. Domain(s) for 1fl6:
    1. 782038Domain d1fl6b1: 1fl6 B:1-113 [65025]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
    2. 782039Domain d1fl6h1: 1fl6 H:1-113 [65027]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
  9. Domain(s) for 1flr:
  10. Domain(s) for 1iai:
  11. Domain(s) for 1kel:
  12. Domain(s) for 1kem:
  13. Domain(s) for 1m71:
  14. Domain(s) for 1m7d:
  15. Domain(s) for 1m7i:
  16. Domain(s) for 1mam:
  17. Domain(s) for 1mcp:
  18. Domain(s) for 1nbv:
  19. Domain(s) for 1pz5:
  20. Domain(s) for 1q72:
  21. Domain(s) for 1q9k:
  22. Domain(s) for 1q9l:
    1. 782030Domain d1q9lb1: 1q9l B:1-111 [96282]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
    2. 782031Domain d1q9ld1: 1q9l D:1-111 [96286]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
  23. Domain(s) for 1q9o:
    1. 782010Domain d1q9ob1: 1q9o B:1-111 [96294]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
    2. 782011Domain d1q9od1: 1q9o D:1-111 [96298]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
      complexed with mg
  24. Domain(s) for 1q9q:
  25. Domain(s) for 1q9r:
  26. Domain(s) for 1q9t:
  27. Domain(s) for 1q9v:
  28. Domain(s) for 1q9w:
    1. 782008Domain d1q9wb1: 1q9w B:1-111 [96322]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
    2. 782009Domain d1q9wd1: 1q9w D:1-111 [96326]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
      complexed with gp1, gp4, kdo, mg
  29. Domain(s) for 1qyg:
  30. Domain(s) for 1rfd:
  31. Domain(s) for 1riu:
  32. Domain(s) for 1riv:
  33. Domain(s) for 1sbs:
  34. Domain(s) for 1sm3:
  35. Domain(s) for 1t66:
    1. 782032Domain d1t66d1: 1t66 D:1-118 [106547]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
    2. 782033Domain d1t66h1: 1t66 H:1-118 [106549]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
      complexed with flu
  36. Domain(s) for 1v7m:
    1. 782044Domain d1v7mh1: 1v7m H:1-116 [100450]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 782045Domain d1v7mi1: 1v7m I:1-116 [100452]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  37. Domain(s) for 1v7n:
    1. 782057Domain d1v7nh1: 1v7n H:1-116 [100460]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 782058Domain d1v7ni1: 1v7n I:1-116 [100462]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 782059Domain d1v7nj1: 1v7n J:1-116 [100464]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 782060Domain d1v7nk1: 1v7n K:1-116 [100466]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
      mutant
  38. Domain(s) for 1wc7:
    1. 782046Domain d1wc7b1: 1wc7 B:1-113 [144550]
      Other proteins in same PDB: d1wc7a1, d1wc7a2, d1wc7b2, d1wc7h2, d1wc7l1, d1wc7l2
      complexed with iod, pp3
    2. 782047Domain d1wc7h1: 1wc7 H:1-113 [144552]
      Other proteins in same PDB: d1wc7a1, d1wc7a2, d1wc7b2, d1wc7h2, d1wc7l1, d1wc7l2
      automatically matched to 1WC7 B:1-113
      complexed with iod, pp3
  39. Domain(s) for 1wcb:
    1. 782036Domain d1wcbb1: 1wcb B:1-113 [144554]
      Other proteins in same PDB: d1wcba1, d1wcba2, d1wcbb2, d1wcbh2, d1wcbl1, d1wcbl2
      automatically matched to 1WC7 B:1-113
      complexed with iod, pe1
    2. 782037Domain d1wcbh1: 1wcb H:1-113 [144556]
      Other proteins in same PDB: d1wcba1, d1wcba2, d1wcbb2, d1wcbh2, d1wcbl1, d1wcbl2
      automatically matched to 1WC7 B:1-113
      complexed with iod, pe1
  40. Domain(s) for 1wz1:
  41. Domain(s) for 2bmk:
    1. 782027Domain d2bmkb1: 2bmk B:1-113 [144992]
      Other proteins in same PDB: d2bmka1, d2bmka2, d2bmkb2, d2bmkh2, d2bmkl1, d2bmkl2
      automatically matched to 1WC7 B:1-113
      complexed with iod, pdd
    2. 782028Domain d2bmkh1: 2bmk H:1-113 [144994]
      Other proteins in same PDB: d2bmka1, d2bmka2, d2bmkb2, d2bmkh2, d2bmkl1, d2bmkl2
      automatically matched to 1WC7 B:1-113
      complexed with iod, pdd
  42. Domain(s) for 2ck0:
  43. Domain(s) for 2dlf:
  44. Domain(s) for 2mcp:
  45. Domain(s) for 2uud:
    1. 782050Domain d2uudh1: 2uud H:1-113 [152181]
      complexed with phx
    2. 782051Domain d2uudj1: 2uud J:1-113 [152182]
      complexed with phx
  46. Domain(s) for 3ck0:
  47. Domain(s) for 4fab:

More info for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: