Lineage for Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652160Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 652366Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (43 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]:

  1. Domain(s) for 1aif:
    1. 652419Domain d1aifb1: 1aif B:1-121 [20077]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
    2. 652420Domain d1aifh1: 1aif H:1-121 [20079]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
  2. Domain(s) for 1axt:
  3. Domain(s) for 1cbv:
  4. Domain(s) for 1ck0:
  5. Domain(s) for 1clo:
  6. Domain(s) for 1dlf:
  7. Domain(s) for 1fl5:
    1. 652391Domain d1fl5b1: 1fl5 B:1-113 [65017]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
    2. 652392Domain d1fl5h1: 1fl5 H:1-113 [65019]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
  8. Domain(s) for 1fl6:
    1. 652405Domain d1fl6b1: 1fl6 B:1-113 [65025]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
    2. 652406Domain d1fl6h1: 1fl6 H:1-113 [65027]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
  9. Domain(s) for 1flr:
  10. Domain(s) for 1iai:
  11. Domain(s) for 1kel:
  12. Domain(s) for 1kem:
  13. Domain(s) for 1m71:
  14. Domain(s) for 1m7d:
  15. Domain(s) for 1m7i:
  16. Domain(s) for 1mam:
  17. Domain(s) for 1mcp:
  18. Domain(s) for 1nbv:
  19. Domain(s) for 1pz5:
  20. Domain(s) for 1q72:
  21. Domain(s) for 1q9k:
  22. Domain(s) for 1q9l:
    1. 652394Domain d1q9lb1: 1q9l B:1-111 [96282]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
    2. 652395Domain d1q9ld1: 1q9l D:1-111 [96286]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
  23. Domain(s) for 1q9o:
    1. 652378Domain d1q9ob1: 1q9o B:1-111 [96294]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
    2. 652379Domain d1q9od1: 1q9o D:1-111 [96298]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
      complexed with mg
  24. Domain(s) for 1q9q:
  25. Domain(s) for 1q9r:
  26. Domain(s) for 1q9t:
  27. Domain(s) for 1q9v:
  28. Domain(s) for 1q9w:
    1. 652375Domain d1q9wb1: 1q9w B:1-111 [96322]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
    2. 652376Domain d1q9wd1: 1q9w D:1-111 [96326]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
      complexed with gp1, gp4, kdo, mg
  29. Domain(s) for 1qyg:
  30. Domain(s) for 1rfd:
  31. Domain(s) for 1riu:
  32. Domain(s) for 1riv:
  33. Domain(s) for 1sbs:
  34. Domain(s) for 1sm3:
  35. Domain(s) for 1t66:
    1. 652396Domain d1t66d1: 1t66 D:1-118 [106547]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
    2. 652397Domain d1t66h1: 1t66 H:1-118 [106549]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
      complexed with flu
  36. Domain(s) for 1v7m:
    1. 652407Domain d1v7mh1: 1v7m H:1-116 [100450]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
    2. 652408Domain d1v7mi1: 1v7m I:1-116 [100452]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  37. Domain(s) for 1v7n:
    1. 652415Domain d1v7nh1: 1v7n H:1-116 [100460]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    2. 652416Domain d1v7ni1: 1v7n I:1-116 [100462]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    3. 652417Domain d1v7nj1: 1v7n J:1-116 [100464]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    4. 652418Domain d1v7nk1: 1v7n K:1-116 [100466]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
      mutant
  38. Domain(s) for 1wz1:
  39. Domain(s) for 2ck0:
  40. Domain(s) for 2dlf:
  41. Domain(s) for 2mcp:
  42. Domain(s) for 3ck0:
  43. Domain(s) for 4fab:

More info for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: