Lineage for Species: Mouse (Mus musculus), cluster 1

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 450916Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451027Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (42 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1:

  1. Domain(s) for 1aif:
    1. 451079Domain d1aifb1: 1aif B:1-121 [20077]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
    2. 451080Domain d1aifh1: 1aif H:1-121 [20079]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3 !SQ P01796 #! HV27_MOUSE Ig heavy chain V-III region A4
  2. Domain(s) for 1axt:
  3. Domain(s) for 1cbv:
  4. Domain(s) for 1ck0:
  5. Domain(s) for 1clo:
  6. Domain(s) for 1dlf:
  7. Domain(s) for 1fl5:
    1. 451052Domain d1fl5b1: 1fl5 B:1-113 [65017]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
    2. 451053Domain d1fl5h1: 1fl5 H:1-113 [65019]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
  8. Domain(s) for 1fl6:
    1. 451065Domain d1fl6b1: 1fl6 B:1-113 [65025]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
    2. 451066Domain d1fl6h1: 1fl6 H:1-113 [65027]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
  9. Domain(s) for 1flr:
  10. Domain(s) for 1iai:
  11. Domain(s) for 1kel:
  12. Domain(s) for 1kem:
  13. Domain(s) for 1m71:
  14. Domain(s) for 1m7d:
  15. Domain(s) for 1m7i:
  16. Domain(s) for 1mam:
  17. Domain(s) for 1mcp:
  18. Domain(s) for 1nbv:
  19. Domain(s) for 1pz5:
  20. Domain(s) for 1q72:
  21. Domain(s) for 1q9k:
  22. Domain(s) for 1q9l:
    1. 451055Domain d1q9lb1: 1q9l B:1-111 [96282]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
    2. 451056Domain d1q9ld1: 1q9l D:1-111 [96286]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
  23. Domain(s) for 1q9o:
    1. 451039Domain d1q9ob1: 1q9o B:1-111 [96294]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
    2. 451040Domain d1q9od1: 1q9o D:1-111 [96298]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
  24. Domain(s) for 1q9q:
  25. Domain(s) for 1q9r:
  26. Domain(s) for 1q9t:
  27. Domain(s) for 1q9v:
  28. Domain(s) for 1q9w:
    1. 451036Domain d1q9wb1: 1q9w B:1-111 [96322]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
    2. 451037Domain d1q9wd1: 1q9w D:1-111 [96326]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
  29. Domain(s) for 1qyg:
  30. Domain(s) for 1rfd:
  31. Domain(s) for 1riu:
  32. Domain(s) for 1riv:
  33. Domain(s) for 1sbs:
  34. Domain(s) for 1sm3:
  35. Domain(s) for 1t66:
    1. 451057Domain d1t66d1: 1t66 D:1-118 [106547]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
    2. 451058Domain d1t66h1: 1t66 H:1-118 [106549]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
  36. Domain(s) for 1v7m:
    1. 451067Domain d1v7mh1: 1v7m H:1-116 [100450]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
    2. 451068Domain d1v7mi1: 1v7m I:1-116 [100452]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  37. Domain(s) for 1v7n:
    1. 451075Domain d1v7nh1: 1v7n H:1-116 [100460]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    2. 451076Domain d1v7ni1: 1v7n I:1-116 [100462]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    3. 451077Domain d1v7nj1: 1v7n J:1-116 [100464]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    4. 451078Domain d1v7nk1: 1v7n K:1-116 [100466]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  38. Domain(s) for 2ck0:
  39. Domain(s) for 2dlf:
  40. Domain(s) for 2mcp:
  41. Domain(s) for 3ck0:
  42. Domain(s) for 4fab:

More info for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: