Lineage for Species: Mouse (Mus musculus), cluster 1

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287270Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (22 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1:

  1. Domain(s) for 1aif:
    1. 287294Domain d1aifb1: 1aif B:1-121 [20077]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
    2. 287295Domain d1aifh1: 1aif H:1-121 [20079]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
  2. Domain(s) for 1axt:
  3. Domain(s) for 1cbv:
  4. Domain(s) for 1clo:
  5. Domain(s) for 1dlf:
  6. Domain(s) for 1fl5:
    1. 287279Domain d1fl5b1: 1fl5 B:1-113 [65017]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
    2. 287280Domain d1fl5h1: 1fl5 H:1-113 [65019]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
  7. Domain(s) for 1fl6:
    1. 287287Domain d1fl6b1: 1fl6 B:1-113 [65025]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
    2. 287288Domain d1fl6h1: 1fl6 H:1-113 [65027]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
  8. Domain(s) for 1flr:
  9. Domain(s) for 1iai:
  10. Domain(s) for 1kel:
  11. Domain(s) for 1kem:
  12. Domain(s) for 1m71:
  13. Domain(s) for 1m7d:
  14. Domain(s) for 1m7i:
  15. Domain(s) for 1mam:
  16. Domain(s) for 1mcp:
  17. Domain(s) for 1nbv:
  18. Domain(s) for 1sbs:
  19. Domain(s) for 1sm3:
  20. Domain(s) for 2dlf:
  21. Domain(s) for 2mcp:
  22. Domain(s) for 4fab:

More info for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: