Lineage for Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2017580Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (68 PDB entries)
    Uniprot P01796 # ! HV27_MOUSE Ig heavy chain V-III region A4

PDB entries in Species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]:

  1. Domain(s) for 1aif:
    1. 2017668Domain d1aifb1: 1aif B:1-121 [20077]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
    2. 2017669Domain d1aifh1: 1aif H:1-121 [20079]
      Other proteins in same PDB: d1aifa1, d1aifa2, d1aifb2, d1aifh2, d1aifl1, d1aifl2
      part of Fab 409.5.3
  2. Domain(s) for 1axt:
  3. Domain(s) for 1cbv:
  4. Domain(s) for 1ck0:
  5. Domain(s) for 1clo:
  6. Domain(s) for 1dlf:
  7. Domain(s) for 1fl5:
    1. 2017621Domain d1fl5b1: 1fl5 B:1-113 [65017]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4
    2. 2017622Domain d1fl5h1: 1fl5 H:1-113 [65019]
      Other proteins in same PDB: d1fl5a1, d1fl5a2, d1fl5b2, d1fl5h2, d1fl5l1, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4
  8. Domain(s) for 1fl6:
    1. 2017641Domain d1fl6b1: 1fl6 B:1-113 [65025]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah
    2. 2017642Domain d1fl6h1: 1fl6 H:1-113 [65027]
      Other proteins in same PDB: d1fl6a1, d1fl6a2, d1fl6b2, d1fl6h2, d1fl6l1, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah
  9. Domain(s) for 1flr:
  10. Domain(s) for 1iai:
  11. Domain(s) for 1kel:
  12. Domain(s) for 1kem:
  13. Domain(s) for 1m71:
  14. Domain(s) for 1m7d:
  15. Domain(s) for 1m7i:
  16. Domain(s) for 1mam:
  17. Domain(s) for 1mcp:
  18. Domain(s) for 1nbv:
  19. Domain(s) for 1pz5:
  20. Domain(s) for 1q72:
  21. Domain(s) for 1q9k:
  22. Domain(s) for 1q9l:
    1. 2017628Domain d1q9lb1: 1q9l B:1-111 [96282]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
    2. 2017629Domain d1q9ld1: 1q9l D:1-111 [96286]
      Other proteins in same PDB: d1q9la1, d1q9la2, d1q9lb2, d1q9lc1, d1q9lc2, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
  23. Domain(s) for 1q9o:
    1. 2017602Domain d1q9ob1: 1q9o B:1-111 [96294]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
      complexed with mg
    2. 2017603Domain d1q9od1: 1q9o D:1-111 [96298]
      Other proteins in same PDB: d1q9oa1, d1q9oa2, d1q9ob2, d1q9oc1, d1q9oc2, d1q9od2
      part of Fab s45-18
      complexed with mg
  24. Domain(s) for 1q9q:
  25. Domain(s) for 1q9r:
  26. Domain(s) for 1q9t:
  27. Domain(s) for 1q9v:
  28. Domain(s) for 1q9w:
    1. 2017598Domain d1q9wb1: 1q9w B:1-111 [96322]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
      complexed with mg
    2. 2017599Domain d1q9wd1: 1q9w D:1-111 [96326]
      Other proteins in same PDB: d1q9wa1, d1q9wa2, d1q9wb2, d1q9wc1, d1q9wc2, d1q9wd2
      part of Fab s45-18
      complexed with mg
  29. Domain(s) for 1qyg:
  30. Domain(s) for 1rfd:
  31. Domain(s) for 1riu:
  32. Domain(s) for 1riv:
  33. Domain(s) for 1sbs:
  34. Domain(s) for 1sm3:
  35. Domain(s) for 1t66:
    1. 2017624Domain d1t66d1: 1t66 D:1-118 [106547]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
      complexed with flu
    2. 2017625Domain d1t66h1: 1t66 H:1-118 [106549]
      Other proteins in same PDB: d1t66c1, d1t66c2, d1t66d2, d1t66h2, d1t66l1, d1t66l2
      complexed with flu
  36. Domain(s) for 1v7m:
    1. 2017643Domain d1v7mh1: 1v7m H:1-116 [100450]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 2017644Domain d1v7mi1: 1v7m I:1-116 [100452]
      Other proteins in same PDB: d1v7mh2, d1v7mi2, d1v7ml1, d1v7ml2, d1v7mm1, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  37. Domain(s) for 1v7n:
    1. 2017664Domain d1v7nh1: 1v7n H:1-116 [100460]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 2017665Domain d1v7ni1: 1v7n I:1-116 [100462]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 2017666Domain d1v7nj1: 1v7n J:1-116 [100464]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 2017667Domain d1v7nk1: 1v7n K:1-116 [100466]
      Other proteins in same PDB: d1v7nh2, d1v7ni2, d1v7nj2, d1v7nk2, d1v7nl1, d1v7nl2, d1v7nm1, d1v7nm2, d1v7nn1, d1v7nn2, d1v7no1, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  38. Domain(s) for 1wc7:
    1. 2017639Domain d1wc7b1: 1wc7 B:1-113 [144550]
      Other proteins in same PDB: d1wc7a1, d1wc7a2, d1wc7b2, d1wc7h2, d1wc7l1, d1wc7l2
      complexed with iod, pp3
    2. 2017640Domain d1wc7h1: 1wc7 H:1-113 [144552]
      Other proteins in same PDB: d1wc7a1, d1wc7a2, d1wc7b2, d1wc7h2, d1wc7l1, d1wc7l2
      automated match to d1wc7b1
      complexed with iod, pp3
  39. Domain(s) for 1wcb:
    1. 2017634Domain d1wcbb1: 1wcb B:1-113 [144554]
      Other proteins in same PDB: d1wcba1, d1wcba2, d1wcbb2, d1wcbh2, d1wcbl1, d1wcbl2
      automated match to d1wc7b1
      complexed with iod, pe1
    2. 2017635Domain d1wcbh1: 1wcb H:1-113 [144556]
      Other proteins in same PDB: d1wcba1, d1wcba2, d1wcbb2, d1wcbh2, d1wcbl1, d1wcbl2
      automated match to d1wc7b1
      complexed with iod, pe1
  40. Domain(s) for 2a6d:
    1. 2017652Domain d2a6db3: 2a6d B:1-121 [262186]
      Other proteins in same PDB: d2a6db2, d2a6dh2
    2. 2017653Domain d2a6dh3: 2a6d H:1-121 [262188]
      Other proteins in same PDB: d2a6db2, d2a6dh2
  41. Domain(s) for 2a6i:
  42. Domain(s) for 2a6j:
    1. 2017645Domain d2a6jb3: 2a6j B:1-121 [262192]
      Other proteins in same PDB: d2a6ja1, d2a6ja2, d2a6jb2, d2a6jh2, d2a6jl1, d2a6jl2
    2. 2017646Domain d2a6jh3: 2a6j H:1-121 [262194]
      Other proteins in same PDB: d2a6ja1, d2a6ja2, d2a6jb2, d2a6jh2, d2a6jl1, d2a6jl2
  43. Domain(s) for 2a6k:
    1. 2017662Domain d2a6kb3: 2a6k B:1-121 [262196]
      Other proteins in same PDB: d2a6kb2, d2a6kh2
    2. 2017663Domain d2a6kh3: 2a6k H:1-121 [262198]
      Other proteins in same PDB: d2a6kb2, d2a6kh2
  44. Domain(s) for 2bmk:
    1. 2017626Domain d2bmkb1: 2bmk B:1-113 [144992]
      Other proteins in same PDB: d2bmka1, d2bmka2, d2bmkb2, d2bmkh2, d2bmkl1, d2bmkl2
      automated match to d1wc7b1
      complexed with iod, pdd
    2. 2017627Domain d2bmkh1: 2bmk H:1-113 [144994]
      Other proteins in same PDB: d2bmka1, d2bmka2, d2bmkb2, d2bmkh2, d2bmkl1, d2bmkl2
      automated match to d1wc7b1
      complexed with iod, pdd
  45. Domain(s) for 2cjv:
    1. 2017655Domain d2cjvh_: 2cjv H: [303660]
      Other proteins in same PDB: d2cjvk_, d2cjvl_
      automated match to d2uudh1
      complexed with phx
    2. 2017656Domain d2cjvj_: 2cjv J: [303661]
      Other proteins in same PDB: d2cjvk_, d2cjvl_
      automated match to d2uudh1
      complexed with phx
  46. Domain(s) for 2ck0:
  47. Domain(s) for 2dlf:
  48. Domain(s) for 2g60:
  49. Domain(s) for 2mcp:
  50. Domain(s) for 2r1w:
  51. Domain(s) for 2r1x:
  52. Domain(s) for 2r1y:
  53. Domain(s) for 2r23:
  54. Domain(s) for 2r2b:
  55. Domain(s) for 2r2e:
  56. Domain(s) for 2r2h:
  57. Domain(s) for 2uud:
    1. 2017657Domain d2uudh1: 2uud H:1-113 [152181]
      Other proteins in same PDB: d2uudk_, d2uudl_
      complexed with phx
    2. 2017658Domain d2uudj1: 2uud J:1-113 [152182]
      Other proteins in same PDB: d2uudk_, d2uudl_
      complexed with phx
  58. Domain(s) for 2v7h:
    1. 2017660Domain d2v7hb3: 2v7h B:1-121 [262236]
      Other proteins in same PDB: d2v7ha1, d2v7ha2, d2v7hb2, d2v7hh2, d2v7hl1, d2v7hl2
    2. 2017661Domain d2v7hh3: 2v7h H:1-121 [262238]
      Other proteins in same PDB: d2v7ha1, d2v7ha2, d2v7hb2, d2v7hh2, d2v7hl1, d2v7hl2
  59. Domain(s) for 2zkh:
  60. Domain(s) for 3bpc:
  61. Domain(s) for 3ck0:
  62. Domain(s) for 3fo9:
    1. 2017610Domain d3fo9b1: 3fo9 B:1-113 [210028]
      Other proteins in same PDB: d3fo9a1, d3fo9a2, d3fo9b2, d3fo9h2, d3fo9l1, d3fo9l2
      automated match to d1axth1
      complexed with dik
    2. 2017611Domain d3fo9h1: 3fo9 H:1-113 [210030]
      Other proteins in same PDB: d3fo9a1, d3fo9a2, d3fo9b2, d3fo9h2, d3fo9l1, d3fo9l2
      automated match to d1axth1
      complexed with dik
  63. Domain(s) for 3sy0:
  64. Domain(s) for 3t4y:
  65. Domain(s) for 3t65:
  66. Domain(s) for 3t77:
  67. Domain(s) for 4fab:
  68. Domain(s) for 4hgw:

More info for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: