Lineage for Species: Human (Homo sapiens), cluster 3

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 546556Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 546669Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (12 PDB entries)

PDB entries in Species: Human (Homo sapiens), cluster 3:

  1. Domain(s) for 1adq:
  2. Domain(s) for 1aqk:
  3. Domain(s) for 1dee:
    1. 546680Domain d1deeb1: 1dee B:501-621 [20443]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
    2. 546681Domain d1deed1: 1dee D:1501-1621 [20445]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
    3. 546682Domain d1deef1: 1dee F:2501-2621 [20447]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
      part of IgM RF 2A2
  4. Domain(s) for 1dfb:
  5. Domain(s) for 1dql:
  6. Domain(s) for 1hez:
    1. 546683Domain d1hezb1: 1hez B:1-121 [60985]
      Other proteins in same PDB: d1heza1, d1heza2, d1hezb2, d1hezc1, d1hezc2, d1hezd2, d1heze_
    2. 546684Domain d1hezd1: 1hez D:1-121 [60989]
      Other proteins in same PDB: d1heza1, d1heza2, d1hezb2, d1hezc1, d1hezc2, d1hezd2, d1heze_
      part of IgM RF 2A2
      complexed with imd
  7. Domain(s) for 1igm:
  8. Domain(s) for 1nl0:
  9. Domain(s) for 1w72:
    1. 546674Domain d1w72h1: 1w72 H:1-113 [114299]
      Other proteins in same PDB: d1w72a1, d1w72a2, d1w72b_, d1w72d1, d1w72d2, d1w72e_, d1w72h2, d1w72i2, d1w72l1, d1w72l2, d1w72m1, d1w72m2
    2. 546675Domain d1w72i1: 1w72 I:1-113 [114301]
      Other proteins in same PDB: d1w72a1, d1w72a2, d1w72b_, d1w72d1, d1w72d2, d1w72e_, d1w72h2, d1w72i2, d1w72l1, d1w72l2, d1w72m1, d1w72m2
      complexed with gol
  10. Domain(s) for 2fb4:
  11. Domain(s) for 2ig2:
  12. Domain(s) for 8fab:
    1. 546670Domain d8fabb1: 8fab B:1-121 [19773]
      Other proteins in same PDB: d8faba1, d8faba2, d8fabb2, d8fabc1, d8fabc2, d8fabd2
    2. 546671Domain d8fabd1: 8fab D:1-121 [19775]
      Other proteins in same PDB: d8faba1, d8faba2, d8fabb2, d8fabc1, d8fabc2, d8fabd2
      part of Fab HIL

More info for Species Human (Homo sapiens), cluster 3 [TaxId:9606] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Human (Homo sapiens), cluster 3 [TaxId:9606] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: