Lineage for Species: Rat (Rattus norvegicus)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 288262Species Rat (Rattus norvegicus) [TaxId:10116] [88532] (7 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus):

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 288268Domain d1bfoa1: 1bfo A:1-107 [20310]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
    2. 288269Domain d1bfoc1: 1bfo C:1-107 [20312]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
    3. 288270Domain d1bfoe1: 1bfo E:1-107 [20314]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
    4. 288271Domain d1bfog1: 1bfo G:1-107 [20316]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 288266Domain d1c5da1: 1c5d A:1-106 [20414]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 288267Domain d1c5dl1: 1c5d L:1-106 [20412]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 288275Domain d1f3rb2: 1f3r B:139-257 [20417]
      Other proteins in same PDB: d1f3rb1
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
      mutant
  6. Domain(s) for 1fn4:
    1. 288272Domain d1fn4a1: 1fn4 A:1-107 [59884]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
    2. 288273Domain d1fn4c1: 1fn4 C:1-107 [59888]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 288263Domain d1lk3l1: 1lk3 L:1-106 [73956]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
    2. 288264Domain d1lk3m1: 1lk3 M:1-106 [73958]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
      part of anti-IL-10 Fab 9D7

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: