Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2740696Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2741585Species Norway rat (Rattus norvegicus) [TaxId:10116] [88532] (14 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 2741591Domain d1bfoa1: 1bfo A:1-107 [20310]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    2. 2741592Domain d1bfoc1: 1bfo C:1-107 [20312]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    3. 2741593Domain d1bfoe1: 1bfo E:1-107 [20314]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    4. 2741594Domain d1bfog1: 1bfo G:1-107 [20316]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 2741600Domain d1c5da1: 1c5d A:1-106 [20414]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 2741601Domain d1c5dl1: 1c5d L:1-106 [20412]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 2741607Domain d1f3rb2: 1f3r B:139-257 [20417]
      Other proteins in same PDB: d1f3rb1
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
  6. Domain(s) for 1fn4:
    1. 2741602Domain d1fn4a1: 1fn4 A:1-107 [59884]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
      part of Fab 198 against acetylcholine receptor
    2. 2741603Domain d1fn4c1: 1fn4 C:1-107 [59888]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 2741586Domain d1lk3l1: 1lk3 L:1-106 [73956]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
      part of anti-IL-10 Fab 9D7
    2. 2741587Domain d1lk3m1: 1lk3 M:1-106 [73958]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1za3:
    1. 2741605Domain d1za3a1: 1za3 A:1-106 [124787]
      Other proteins in same PDB: d1za3a2, d1za3b1, d1za3b2, d1za3h1, d1za3h2, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
      automatically matched to d1c5da1
    2. 2741606Domain d1za3l1: 1za3 L:1-106 [124793]
      Other proteins in same PDB: d1za3a2, d1za3b1, d1za3b2, d1za3h1, d1za3h2, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
      automatically matched to d1c5da1
  9. Domain(s) for 2arj:
    1. 2741598Domain d2arja1: 2arj A:1-107 [144829]
      Other proteins in same PDB: d2arja2, d2arjb1, d2arjb2, d2arjh1, d2arjh2, d2arjl2, d2arjq_, d2arjr_
    2. 2741599Domain d2arjl1: 2arj L:1-107 [144835]
      Other proteins in same PDB: d2arja2, d2arjb1, d2arjb2, d2arjh1, d2arjh2, d2arjl2, d2arjq_, d2arjr_
      automated match to d2arja1
  10. Domain(s) for 6w0f:
  11. Domain(s) for 6w0g:
  12. Domain(s) for 6w0h:
  13. Domain(s) for 6w0i:
  14. Domain(s) for 6w0j:

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: