Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2352459Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2352460Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2352461Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2353665Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2354190Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (42 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 2354205Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
    2. 2354206Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 2354246Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2354247Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 2354258Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2354259Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 2354200Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 2354201Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 2354225Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 2354226Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 2354227Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 2354228Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  18. Domain(s) for 1z3g:
    1. 2354254Domain d1z3gl1: 1z3g L:1-106 [144733]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
    2. 2354255Domain d1z3gm1: 1z3g M:1-106 [144735]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
      automatically matched to 1Z3G L:1-106
  19. Domain(s) for 2exw:
    1. 2354236Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 2354237Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  20. Domain(s) for 2ez0:
    1. 2354252Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354253Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  21. Domain(s) for 2fec:
    1. 2354256Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 2354257Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  22. Domain(s) for 2fed:
    1. 2354220Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 2354221Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  23. Domain(s) for 2fee:
    1. 2354234Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 2354235Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  24. Domain(s) for 2hlf:
    1. 2354250Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354251Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  25. Domain(s) for 2ht2:
    1. 2354248Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354249Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  26. Domain(s) for 2ht3:
    1. 2354244Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354245Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  27. Domain(s) for 2ht4:
    1. 2354222Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354223Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  28. Domain(s) for 2htk:
    1. 2354238Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354239Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  29. Domain(s) for 2htl:
    1. 2354240Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2354241Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  30. Domain(s) for 2iff:
  31. Domain(s) for 2osl:
    1. 2354213Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 2354214Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
  32. Domain(s) for 2z93:
  33. Domain(s) for 2zkh:
  34. Domain(s) for 3det:
    1. 2354232Domain d3detd1: 3det D:1-106 [157596]
      Other proteins in same PDB: d3deta_, d3detb_, d3detd2, d3detf2
      automated match to d1otsd1
      mutant
    2. 2354233Domain d3detf1: 3det F:1-106 [157598]
      Other proteins in same PDB: d3deta_, d3detb_, d3detd2, d3detf2
      automated match to d1otsd1
      mutant
  35. Domain(s) for 3ejz:
    1. 2354209Domain d3ejzd1: 3ejz D:1-106 [227316]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2354210Domain d3ejzf1: 3ejz F:1-106 [227318]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
  36. Domain(s) for 4ene:
    1. 2354195Domain d4ened1: 4ene D:1-106 [220683]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu, mal
    2. 2354196Domain d4enef1: 4ene F:1-106 [220687]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu, mal
  37. Domain(s) for 4kjq:
    1. 2354216Domain d4kjqd1: 4kjq D:1-106 [224314]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
    2. 2354217Domain d4kjqf1: 4kjq F:1-106 [224318]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
  38. Domain(s) for 4kk8:
    1. 2354211Domain d4kk8d1: 4kk8 D:1-106 [224328]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2354212Domain d4kk8f1: 4kk8 F:1-106 [224332]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
  39. Domain(s) for 4kkl:
    1. 2354230Domain d4kkld1: 4kkl D:1-106 [224338]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2354231Domain d4kklf1: 4kkl F:1-106 [224342]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
  40. Domain(s) for 4lou:
    1. 2354203Domain d4loud1: 4lou D:1-106 [224737]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant
    2. 2354204Domain d4louf1: 4lou F:1-106 [224741]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant
  41. Domain(s) for 6ad7:
    1. 2354242Domain d6ad7d1: 6ad7 D:1-106 [373422]
      Other proteins in same PDB: d6ad7a_, d6ad7b_, d6ad7c1, d6ad7c2, d6ad7d2, d6ad7e1, d6ad7e2, d6ad7f2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2354243Domain d6ad7f1: 6ad7 F:1-106 [373461]
      Other proteins in same PDB: d6ad7a_, d6ad7b_, d6ad7c1, d6ad7c2, d6ad7d2, d6ad7e1, d6ad7e2, d6ad7f2
      automated match to d1otsd1
      complexed with br; mutant
  42. Domain(s) for 6adb:
    1. 2354218Domain d6adbd1: 6adb D:1-106 [373398]
      Other proteins in same PDB: d6adba_, d6adbb_, d6adbc1, d6adbc2, d6adbd2, d6adbe1, d6adbe2, d6adbf2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2354219Domain d6adbf1: 6adb F:1-106 [373393]
      Other proteins in same PDB: d6adba_, d6adbb_, d6adbc1, d6adbc2, d6adbd2, d6adbe1, d6adbe2, d6adbf2
      automated match to d1otsd1
      complexed with br; mutant

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: