Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653446Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (40 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 653471Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
    2. 653472Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 653493Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
    2. 653494Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 653505Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
    2. 653506Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 653467Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
    2. 653468Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 653479Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    2. 653480Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    3. 653481Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
    4. 653482Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
      mutant
  18. Domain(s) for 1wc7:
    1. 653462Domain d1wc7a1: 1wc7 A:1-107 [120878]
      Other proteins in same PDB: d1wc7a2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
    2. 653463Domain d1wc7l1: 1wc7 L:1-107 [120880]
      Other proteins in same PDB: d1wc7a2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
  19. Domain(s) for 1wcb:
    1. 653458Domain d1wcba1: 1wcb A:1-107 [120882]
      Other proteins in same PDB: d1wcba2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
    2. 653459Domain d1wcbl1: 1wcb L:1-107 [120884]
      Other proteins in same PDB: d1wcba2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
  20. Domain(s) for 1yqv:
  21. Domain(s) for 2b2x:
    1. 653453Domain d2b2xl1: 2b2x L:2-106 [127750]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
    2. 653454Domain d2b2xm1: 2b2x M:2-106 [127752]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
  22. Domain(s) for 2bmk:
    1. 653450Domain d2bmka1: 2bmk A:1-107 [128798]
      Other proteins in same PDB: d2bmka2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
    2. 653451Domain d2bmkl1: 2bmk L:1-107 [128800]
      Other proteins in same PDB: d2bmka2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
  23. Domain(s) for 2exw:
    1. 653483Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 653484Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  24. Domain(s) for 2exy:
    1. 653507Domain d2exyd1: 2exy D:1-105 [132574]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
    2. 653508Domain d2exyf1: 2exy F:1-105 [132576]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
  25. Domain(s) for 2ez0:
    1. 653499Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653500Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  26. Domain(s) for 2fec:
    1. 653503Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 653504Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  27. Domain(s) for 2fed:
    1. 653475Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 653476Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  28. Domain(s) for 2fee:
    1. 653509Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 653510Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  29. Domain(s) for 2h2p:
    1. 653487Domain d2h2pd1: 2h2p D:1-105 [136018]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
    2. 653488Domain d2h2pf1: 2h2p F:1-105 [136020]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
  30. Domain(s) for 2h2s:
    1. 653501Domain d2h2sd1: 2h2s D:1-105 [136024]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
    2. 653502Domain d2h2sf1: 2h2s F:1-105 [136026]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
  31. Domain(s) for 2hlf:
    1. 653495Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653496Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  32. Domain(s) for 2ht2:
    1. 653497Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653498Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  33. Domain(s) for 2ht3:
    1. 653489Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653490Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  34. Domain(s) for 2ht4:
    1. 653477Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653478Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  35. Domain(s) for 2htk:
    1. 653485Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653486Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  36. Domain(s) for 2htl:
    1. 653491Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 653492Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  37. Domain(s) for 2iff:
  38. Domain(s) for 2j4w:
  39. Domain(s) for 2j5l:
  40. Domain(s) for 2osl:
    1. 653469Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 653470Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: