SCOP 1.67: Species: Mouse (Mus musculus), cluster 3.2

Lineage for Species: Mouse (Mus musculus), cluster 3.2

Root: SCOP 1.67
Class b: All beta proteins [48724] (141 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (22 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (4 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (24 proteins)

Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (18 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.2:

Domain(s) for 1ay1:
- Domain d1ay1l1: 1ay1 L:1-107 [20242]
  Other proteins in same PDB: d1ay1h1, d1ay1h2, d1ay1l2
  part of Fab TP7 against Taq DNA polymerase
Domain(s) for 1baf:
- Domain d1bafl1: 1baf L:1-108 [19778]
  Other proteins in same PDB: d1bafh1, d1bafh2, d1bafl2
  part of Fab ANO2
  complexed with npp
Domain(s) for 1bgx:
- Domain d1bgxl1: 1bgx L:1-107 [20244]
  Other proteins in same PDB: d1bgxh1, d1bgxh2, d1bgxl2, d1bgxt1, d1bgxt2, d1bgxt3, d1bgxt4
  part of Fab TP7 against Taq DNA polymerase
Domain(s) for 1bql:
- Domain d1bqll1: 1bql L:1-106 [19970]
  Other proteins in same PDB: d1bqlh1, d1bqlh2, d1bqll2, d1bqly_
  part of Fab HyHEL-5
Domain(s) for 1dqd:
- Domain d1dqdl1: 1dqd L:1-106 [20440]
  Other proteins in same PDB: d1dqdh1, d1dqdh2, d1dqdl2
  part of Fab HGR-2 F6, a competitive antagonist of the glucagon receptor
Domain(s) for 1eo8:
- Domain d1eo8l1: 1eo8 L:1-106B [20294]
  Other proteins in same PDB: d1eo8a_, d1eo8b_, d1eo8h1, d1eo8h2, d1eo8l2
  part of Influenza virus hemagglutinin-neutralizing Fab BH151
  complexed with man, nag
Domain(s) for 1for:
- Domain d1forl1: 1for L:1-107 [19988]
  Other proteins in same PDB: d1forh1, d1forh2, d1forl2
  part of Fab 17-Ia
Domain(s) for 1mim:
- Domain d1miml1: 1mim L:1-105 [20128]
  Other proteins in same PDB: d1mimh1, d1mimh2, d1miml2
  part of CD25-binding humanized Fab CHI621
Domain(s) for 1ots:
1. Domain d1otsd1: 1ots D:1-106 [87419]
  Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
2. Domain d1otsf1: 1ots F:1-106 [87423]
  Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
  part of anti-CLC chloride channel Fab
  complexed with cl
Domain(s) for 1ott:
1. Domain d1ottd1: 1ott D:1-106 [87429]
  Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
2. Domain d1ottf1: 1ott F:1-106 [87433]
  Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
  part of anti-CLC chloride channel Fab
  complexed with cl; mutant
Domain(s) for 1otu:
1. Domain d1otud1: 1otu D:1-106 [87439]
  Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
2. Domain d1otuf1: 1otu F:1-106 [87443]
  Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
  part of anti-CLC chloride channel Fab
  complexed with cl; mutant
Domain(s) for 1psk:
- Domain d1pskl1: 1psk L:1-106 [20138]
  Other proteins in same PDB: d1pskh1, d1pskh2, d1pskl2
  part of antibody against the melanoma associated gd2 ganglioside
Domain(s) for 1qok:
- Domain d1qoka2: 1qok A:162-267 [20493]
  Other proteins in same PDB: d1qoka1
  part of anti-carcinoembryonic scFv MFE-23
Domain(s) for 1rvf:
- Domain d1rvfl_: 1rvf L: [19990]
  Other proteins in same PDB: d1rvf.1, d1rvf1_, d1rvf3_, d1rvfh_
  part of Fv 17-Ia
Domain(s) for 1v7m:
1. Domain d1v7ml1: 1v7m L:1-107 [100454]
  Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
2. Domain d1v7mm1: 1v7m M:1-107 [100456]
  Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
  part of anti-trombopoetin Fab tn1

Domain(s) for 1v7n:

Domain d1v7nl1: 1v7n L:1-107 [100468]
Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_

Domain d1v7nm1: 1v7n M:1-107 [100470]
Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_

Domain d1v7nn1: 1v7n N:1-107 [100472]
Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_

Domain d1v7no1: 1v7n O:1-107 [100474]
Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
part of anti-trombopoetin Fab tn1
mutant

Domain(s) for 2iff:
- Domain d2iffl1: 2iff L:1-106 [19972]
  Other proteins in same PDB: d2iffh1, d2iffh2, d2iffl2, d2iffy_
  part of Fab HyHEL-5
  mutant
Domain(s) for 3hfl:
- Domain d3hfll1: 3hfl L:1-106 [19968]
  Other proteins in same PDB: d3hflh1, d3hflh2, d3hfll2, d3hfly_
  part of Fab HyHEL-5

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa:

Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa first appeared in SCOP 1.65
Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa appears in SCOP 1.69
Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa appears in the current release, SCOPe 2.08