Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2740696Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2741215Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (43 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 2741229Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
    2. 2741230Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 2741271Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2741272Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 2741283Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2741284Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 2741223Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 2741224Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 2741249Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 2741250Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 2741251Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 2741252Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  18. Domain(s) for 1z3g:
    1. 2741279Domain d1z3gl1: 1z3g L:1-106 [144733]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
    2. 2741280Domain d1z3gm1: 1z3g M:1-106 [144735]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
      automatically matched to 1Z3G L:1-106
  19. Domain(s) for 2exw:
    1. 2741261Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 2741262Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  20. Domain(s) for 2ez0:
    1. 2741277Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741278Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  21. Domain(s) for 2fec:
    1. 2741281Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 2741282Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  22. Domain(s) for 2fed:
    1. 2741244Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 2741245Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  23. Domain(s) for 2fee:
    1. 2741259Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 2741260Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  24. Domain(s) for 2hlf:
    1. 2741275Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741276Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  25. Domain(s) for 2ht2:
    1. 2741273Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741274Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  26. Domain(s) for 2ht3:
    1. 2741269Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741270Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  27. Domain(s) for 2ht4:
    1. 2741246Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741247Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  28. Domain(s) for 2htk:
    1. 2741263Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741264Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  29. Domain(s) for 2htl:
    1. 2741265Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2741266Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  30. Domain(s) for 2iff:
  31. Domain(s) for 2osl:
    1. 2741239Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 2741240Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
  32. Domain(s) for 2z93:
  33. Domain(s) for 2zkh:
  34. Domain(s) for 3det:
    1. 2741257Domain d3detd1: 3det D:1-106 [157596]
      Other proteins in same PDB: d3deta_, d3detb_, d3detc_, d3detd2, d3dete_, d3detf2
      automated match to d1otsd1
      mutant
    2. 2741258Domain d3detf1: 3det F:1-106 [157598]
      Other proteins in same PDB: d3deta_, d3detb_, d3detc_, d3detd2, d3dete_, d3detf2
      automated match to d1otsd1
      mutant
  35. Domain(s) for 3ejz:
    1. 2741235Domain d3ejzd1: 3ejz D:1-106 [227316]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzc_, d3ejzd2, d3ejze_, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2741236Domain d3ejzf1: 3ejz F:1-106 [227318]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzc_, d3ejzd2, d3ejze_, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
  36. Domain(s) for 4ene:
    1. 2741219Domain d4ened1: 4ene D:1-106 [220683]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu
    2. 2741220Domain d4enef1: 4ene F:1-106 [220687]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu
  37. Domain(s) for 4kjq:
    1. 2741255Domain d4kjqd1: 4kjq D:1-106 [224314]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
    2. 2741256Domain d4kjqf1: 4kjq F:1-106 [224318]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
  38. Domain(s) for 4kk8:
    1. 2741237Domain d4kk8d1: 4kk8 D:1-106 [224328]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2741238Domain d4kk8f1: 4kk8 F:1-106 [224332]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
  39. Domain(s) for 4kkl:
    1. 2741253Domain d4kkld1: 4kkl D:1-106 [224338]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2741254Domain d4kklf1: 4kkl F:1-106 [224342]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
  40. Domain(s) for 4lou:
    1. 2741227Domain d4loud1: 4lou D:1-106 [224737]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant
    2. 2741228Domain d4louf1: 4lou F:1-106 [224741]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant
  41. Domain(s) for 6ad7:
    1. 2741267Domain d6ad7d1: 6ad7 D:1-106 [373422]
      Other proteins in same PDB: d6ad7a_, d6ad7b_, d6ad7c1, d6ad7c2, d6ad7d2, d6ad7e1, d6ad7e2, d6ad7f2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2741268Domain d6ad7f1: 6ad7 F:1-106 [373461]
      Other proteins in same PDB: d6ad7a_, d6ad7b_, d6ad7c1, d6ad7c2, d6ad7d2, d6ad7e1, d6ad7e2, d6ad7f2
      automated match to d1otsd1
      complexed with br; mutant
  42. Domain(s) for 6adb:
    1. 2741242Domain d6adbd1: 6adb D:1-106 [373398]
      Other proteins in same PDB: d6adba_, d6adbb_, d6adbc1, d6adbc2, d6adbd2, d6adbe1, d6adbe2, d6adbf2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2741243Domain d6adbf1: 6adb F:1-106 [373393]
      Other proteins in same PDB: d6adba_, d6adbb_, d6adbc1, d6adbc2, d6adbd2, d6adbe1, d6adbe2, d6adbf2
      automated match to d1otsd1
      complexed with br; mutant
  43. Domain(s) for 7cvt:
    1. 3084706Domain d7cvtd1: 7cvt D:1-106 [421023]
      Other proteins in same PDB: d7cvtc1, d7cvtc2, d7cvtd2, d7cvte1, d7cvte2, d7cvtf2
      automated match to d1otsd1
      complexed with cl; mutant
    2. 3085003Domain d7cvtf1: 7cvt F:1-106 [421320]
      Other proteins in same PDB: d7cvtc1, d7cvtc2, d7cvtd2, d7cvte1, d7cvte2, d7cvtf2
      automated match to d1otsd1
      complexed with cl; mutant

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: