Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2345800Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2346322Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (40 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 2346337Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
    2. 2346338Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 2346374Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2346375Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 2346386Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 2346387Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 2346332Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 2346333Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 2346355Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 2346356Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 2346357Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 2346358Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  18. Domain(s) for 1z3g:
    1. 2346382Domain d1z3gl1: 1z3g L:1-106 [144733]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
    2. 2346383Domain d1z3gm1: 1z3g M:1-106 [144735]
      Other proteins in same PDB: d1z3gh1, d1z3gh2, d1z3gi1, d1z3gi2, d1z3gl2, d1z3gm2
      automatically matched to 1Z3G L:1-106
  19. Domain(s) for 2exw:
    1. 2346366Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 2346367Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  20. Domain(s) for 2ez0:
    1. 2346380Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346381Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  21. Domain(s) for 2fec:
    1. 2346384Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 2346385Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  22. Domain(s) for 2fed:
    1. 2346350Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 2346351Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  23. Domain(s) for 2fee:
    1. 2346364Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 2346365Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  24. Domain(s) for 2hlf:
    1. 2346378Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346379Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  25. Domain(s) for 2ht2:
    1. 2346376Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346377Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  26. Domain(s) for 2ht3:
    1. 2346372Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346373Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  27. Domain(s) for 2ht4:
    1. 2346352Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346353Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  28. Domain(s) for 2htk:
    1. 2346368Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346369Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  29. Domain(s) for 2htl:
    1. 2346370Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 2346371Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  30. Domain(s) for 2iff:
  31. Domain(s) for 2osl:
    1. 2346345Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 2346346Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
  32. Domain(s) for 2z93:
  33. Domain(s) for 2zkh:
  34. Domain(s) for 3det:
    1. 2346362Domain d3detd1: 3det D:1-106 [157596]
      Other proteins in same PDB: d3deta_, d3detb_, d3detd2, d3detf2
      automated match to d1otsd1
      mutant
    2. 2346363Domain d3detf1: 3det F:1-106 [157598]
      Other proteins in same PDB: d3deta_, d3detb_, d3detd2, d3detf2
      automated match to d1otsd1
      mutant
  35. Domain(s) for 3ejz:
    1. 2346341Domain d3ejzd1: 3ejz D:1-106 [227316]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
    2. 2346342Domain d3ejzf1: 3ejz F:1-106 [227318]
      Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2
      automated match to d1otsd1
      complexed with br; mutant
  36. Domain(s) for 4ene:
    1. 2346327Domain d4ened1: 4ene D:1-106 [220683]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu, mal
    2. 2346328Domain d4enef1: 4ene F:1-106 [220687]
      Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2
      automated match to d1otsd1
      complexed with cl, dmu, mal
  37. Domain(s) for 4kjq:
    1. 2346348Domain d4kjqd1: 4kjq D:1-106 [224314]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
    2. 2346349Domain d4kjqf1: 4kjq F:1-106 [224318]
      Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2
      automated match to d1otsd1
      complexed with f
  38. Domain(s) for 4kk8:
    1. 2346343Domain d4kk8d1: 4kk8 D:1-106 [224328]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2346344Domain d4kk8f1: 4kk8 F:1-106 [224332]
      Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2
      automated match to d1otsd1
      complexed with f; mutant
  39. Domain(s) for 4kkl:
    1. 2346360Domain d4kkld1: 4kkl D:1-106 [224338]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
    2. 2346361Domain d4kklf1: 4kkl F:1-106 [224342]
      Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2
      automated match to d1otsd1
      complexed with f; mutant
  40. Domain(s) for 4lou:
    1. 2346335Domain d4loud1: 4lou D:1-106 [224737]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant
    2. 2346336Domain d4louf1: 4lou F:1-106 [224741]
      Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2
      automated match to d1otsd1
      mutant

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: