Lineage for Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1510240Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1510241Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1510242Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1511401Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1511898Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (13 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]:

  1. Domain(s) for 15c8:
  2. Domain(s) for 1aif:
    1. 1511911Domain d1aifa1: 1aif A:1-109 [20076]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
    2. 1511912Domain d1aifl1: 1aif L:1-109 [20078]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
  3. Domain(s) for 1cf8:
  4. Domain(s) for 1fig:
  5. Domain(s) for 1hq4:
    1. 1511904Domain d1hq4a1: 1hq4 A:1-107 [83621]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
    2. 1511905Domain d1hq4c1: 1hq4 C:1-107 [83625]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  6. Domain(s) for 1iai:
  7. Domain(s) for 1ken:
    1. 1511913Domain d1kenl1: 1ken L:1-108 [72381]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 1511914Domain d1kenu1: 1ken U:1-108 [72385]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
  8. Domain(s) for 1ob1:
    1. 1511907Domain d1ob1a1: 1ob1 A:1-106A [86748]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
      complexed with cac
    2. 1511908Domain d1ob1d1: 1ob1 D:1-106A [86754]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
      complexed with cac
  9. Domain(s) for 1orq:
  10. Domain(s) for 1ors:
  11. Domain(s) for 25c8:
  12. Domain(s) for 2a0l:
    1. 1511915Domain d2a0lc1: 2a0l C:1-105 [125956]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
    2. 1511916Domain d2a0le1: 2a0l E:1-105 [125958]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
  13. Domain(s) for 35c8:

More info for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: