Lineage for Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 783123Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (13 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]:

  1. Domain(s) for 15c8:
  2. Domain(s) for 1aif:
    1. 783135Domain d1aifa1: 1aif A:1-109 [20076]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
    2. 783136Domain d1aifl1: 1aif L:1-109 [20078]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
  3. Domain(s) for 1cf8:
  4. Domain(s) for 1fig:
  5. Domain(s) for 1hq4:
    1. 783129Domain d1hq4a1: 1hq4 A:1-107 [83621]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
    2. 783130Domain d1hq4c1: 1hq4 C:1-107 [83625]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  6. Domain(s) for 1iai:
  7. Domain(s) for 1ken:
    1. 783138Domain d1kenl1: 1ken L:1-108 [72381]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 783139Domain d1kenu1: 1ken U:1-108 [72385]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
      complexed with man, nag
  8. Domain(s) for 1ob1:
    1. 783132Domain d1ob1a1: 1ob1 A:1-106A [86748]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
    2. 783133Domain d1ob1d1: 1ob1 D:1-106A [86754]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
      complexed with cac
  9. Domain(s) for 1orq:
  10. Domain(s) for 1ors:
  11. Domain(s) for 25c8:
  12. Domain(s) for 2a0l:
    1. 783140Domain d2a0lc1: 2a0l C:1-105 [125956]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
    2. 783141Domain d2a0le1: 2a0l E:1-105 [125958]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
  13. Domain(s) for 35c8:

More info for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: