Lineage for Species: Mouse (Mus musculus), cluster 3.1

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 288030Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (12 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.1:

  1. Domain(s) for 15c8:
  2. Domain(s) for 1aif:
    1. 288043Domain d1aifa1: 1aif A:1-109 [20076]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
    2. 288044Domain d1aifl1: 1aif L:1-109 [20078]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
  3. Domain(s) for 1cf8:
  4. Domain(s) for 1fig:
  5. Domain(s) for 1hq4:
    1. 288036Domain d1hq4a1: 1hq4 A:1-107 [83621]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
    2. 288037Domain d1hq4c1: 1hq4 C:1-107 [83625]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  6. Domain(s) for 1iai:
  7. Domain(s) for 1ken:
    1. 288045Domain d1kenl1: 1ken L:1-108 [72381]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
    2. 288046Domain d1kenu1: 1ken U:1-108 [72385]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
      complexed with man, nag
  8. Domain(s) for 1ob1:
    1. 288039Domain d1ob1a1: 1ob1 A:1-106A [86748]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
    2. 288040Domain d1ob1d1: 1ob1 D:1-106A [86754]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2
      part of anti-Pf MSP1 Fab
      complexed with cac
  9. Domain(s) for 1orq:
  10. Domain(s) for 1ors:
  11. Domain(s) for 25c8:
  12. Domain(s) for 35c8:

More info for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: