Lineage for Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2345800Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2346303Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (13 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]:

  1. Domain(s) for 15c8:
  2. Domain(s) for 1aif:
    1. 2346316Domain d1aifa1: 1aif A:1-109 [20076]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
    2. 2346317Domain d1aifl1: 1aif L:1-109 [20078]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
  3. Domain(s) for 1cf8:
  4. Domain(s) for 1fig:
  5. Domain(s) for 1hq4:
    1. 2346309Domain d1hq4a1: 1hq4 A:1-107 [83621]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
    2. 2346310Domain d1hq4c1: 1hq4 C:1-107 [83625]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  6. Domain(s) for 1iai:
  7. Domain(s) for 1ken:
    1. 2346318Domain d1kenl1: 1ken L:1-108 [72381]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 2346319Domain d1kenu1: 1ken U:1-108 [72385]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
  8. Domain(s) for 1ob1:
    1. 2346312Domain d1ob1a1: 1ob1 A:1-106A [86748]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1c3, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2, d1ob1f3
      part of anti-Pf MSP1 Fab
      complexed with cac
    2. 2346313Domain d1ob1d1: 1ob1 D:1-106A [86754]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1c3, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2, d1ob1f3
      part of anti-Pf MSP1 Fab
      complexed with cac
  9. Domain(s) for 1orq:
  10. Domain(s) for 1ors:
  11. Domain(s) for 25c8:
  12. Domain(s) for 2a0l:
    1. 2346320Domain d2a0lc1: 2a0l C:1-105 [125956]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
    2. 2346321Domain d2a0le1: 2a0l E:1-105 [125958]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
  13. Domain(s) for 35c8:

More info for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: