Lineage for Species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2021374Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2021375Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2021376Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2022563Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2023025Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (28 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]:

  1. Domain(s) for 1acy:
  2. Domain(s) for 1afv:
    1. 2023059Domain d1afvl1: 1afv L:1-112 [20130]
      Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
      part of Fab 25.3 against HIV-1 capsid protein (p24)
      complexed with pb
    2. 2023060Domain d1afvm1: 1afv M:1-112 [20132]
      Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
      part of Fab 25.3 against HIV-1 capsid protein (p24)
      complexed with pb
  3. Domain(s) for 1ai1:
  4. Domain(s) for 1egj:
  5. Domain(s) for 1ejo:
  6. Domain(s) for 1f11:
    1. 2023052Domain d1f11a1: 1f11 A:1-107 [20456]
      Other proteins in same PDB: d1f11a2, d1f11b1, d1f11b2, d1f11c2, d1f11d1, d1f11d2
      part of anti-Pres2 Fab F124
    2. 2023053Domain d1f11c1: 1f11 C:1-107 [20458]
      Other proteins in same PDB: d1f11a2, d1f11b1, d1f11b2, d1f11c2, d1f11d1, d1f11d2
      part of anti-Pres2 Fab F124
  7. Domain(s) for 1f58:
  8. Domain(s) for 1ggb:
  9. Domain(s) for 1ggc:
  10. Domain(s) for 1ggi:
    1. 2023046Domain d1ggil1: 1ggi L:1-107 [19876]
      Other proteins in same PDB: d1ggih1, d1ggih2, d1ggij1, d1ggij2, d1ggil2, d1ggim2
      part of Fab 50.1
    2. 2023047Domain d1ggim1: 1ggi M:1-107 [19878]
      Other proteins in same PDB: d1ggih1, d1ggih2, d1ggij1, d1ggij2, d1ggil2, d1ggim2
      part of Fab 50.1
  11. Domain(s) for 1h0d:
  12. Domain(s) for 1i7z:
    1. 2023032Domain d1i7za1: 1i7z A:1-107 [61919]
      Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zc2, d1i7zd1, d1i7zd2
      part of humanized Fab GNC92H2
      complexed with coc
    2. 2023033Domain d1i7zc1: 1i7z C:1-107 [61923]
      Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zc2, d1i7zd1, d1i7zd2
      part of humanized Fab GNC92H2
      complexed with coc
  13. Domain(s) for 1ibg:
  14. Domain(s) for 1iqw:
  15. Domain(s) for 1j05:
    1. 2023026Domain d1j05a_: 1j05 A: [90735]
      Other proteins in same PDB: d1j05b_, d1j05h_
      part of anti-CEA Fv T84.66
      complexed with gol, po4
    2. 2023027Domain d1j05l_: 1j05 L: [90738]
      Other proteins in same PDB: d1j05b_, d1j05h_
      part of anti-CEA Fv T84.66
      complexed with gol, po4
  16. Domain(s) for 1mf2:
    1. 2023036Domain d1mf2l1: 1mf2 L:1-107 [20174]
      Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
      part of Fab F11.2.32 against HIV-1 protease
    2. 2023037Domain d1mf2m1: 1mf2 M:1-107 [20176]
      Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
      part of Fab F11.2.32 against HIV-1 protease
  17. Domain(s) for 1moe:
    1. 2023038Domain d1moea1: 1moe A:1-119 [85030]
      Other proteins in same PDB: d1moea2, d1moeb2
      part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
      complexed with so4
    2. 2023039Domain d1moeb1: 1moe B:1-119 [85032]
      Other proteins in same PDB: d1moea2, d1moeb2
      part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
      complexed with so4
  18. Domain(s) for 1nsn:
  19. Domain(s) for 1qfw:
  20. Domain(s) for 1qnz:
  21. Domain(s) for 2aab:
  22. Domain(s) for 2f58:
  23. Domain(s) for 2gsi:
    1. 2023048Domain d2gsia1: 2gsi A:1-107 [135579]
      Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
      automatically matched to d1egjl1
      complexed with na
    2. 2023049Domain d2gsic1: 2gsi C:1-107 [135581]
      Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
      automatically matched to d1egjl1
      complexed with na
    3. 2023050Domain d2gsie1: 2gsi E:1-107 [135583]
      Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
      automatically matched to d1egjl1
      complexed with na
    4. 2023051Domain d2gsig1: 2gsi G:1-107 [135585]
      Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
      automatically matched to d1egjl1
      complexed with na
  24. Domain(s) for 2hrp:
    1. 2023030Domain d2hrpl1: 2hrp L:1-107 [20170]
      Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
      part of Fab F11.2.32 against HIV-1 protease
    2. 2023031Domain d2hrpm1: 2hrp M:1-107 [20172]
      Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
      part of Fab F11.2.32 against HIV-1 protease
  25. Domain(s) for 2nz9:
    1. 2023061Domain d2nz9c1: 2nz9 C:2-111 [138840]
      Other proteins in same PDB: d2nz9c2, d2nz9d1, d2nz9d2, d2nz9e2, d2nz9f1, d2nz9f2
      automatically matched to d1egjl1
      complexed with ca, zn
    2. 2023062Domain d2nz9e1: 2nz9 E:2-111 [138844]
      Other proteins in same PDB: d2nz9c2, d2nz9d1, d2nz9d2, d2nz9e2, d2nz9f1, d2nz9f2
      automatically matched to d1egjl1
      complexed with ca, zn
  26. Domain(s) for 2r69:
  27. Domain(s) for 32c2:
  28. Domain(s) for 3f58:

More info for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: