Lineage for Species: Mouse (Mus musculus), cluster 2

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287999Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (23 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 2:

  1. Domain(s) for 1acy:
  2. Domain(s) for 1afv:
    1. 288026Domain d1afvl1: 1afv L:1-112 [20130]
      Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
    2. 288027Domain d1afvm1: 1afv M:1-112 [20132]
      Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
      part of Fab 25.3 against HIV-1 capsid protein (p24)
      complexed with pb
  3. Domain(s) for 1ai1:
  4. Domain(s) for 1egj:
  5. Domain(s) for 1ejo:
  6. Domain(s) for 1f11:
    1. 288017Domain d1f11a1: 1f11 A:1-107 [20456]
      Other proteins in same PDB: d1f11a2, d1f11b1, d1f11b2, d1f11c2, d1f11d1, d1f11d2
    2. 288018Domain d1f11c1: 1f11 C:1-107 [20458]
      Other proteins in same PDB: d1f11a2, d1f11b1, d1f11b2, d1f11c2, d1f11d1, d1f11d2
      part of anti-Pres2 Fab F124
  7. Domain(s) for 1f58:
  8. Domain(s) for 1ggb:
  9. Domain(s) for 1ggc:
  10. Domain(s) for 1ggi:
    1. 288015Domain d1ggil1: 1ggi L:1-107 [19876]
      Other proteins in same PDB: d1ggih1, d1ggih2, d1ggij1, d1ggij2, d1ggil2, d1ggim2
    2. 288016Domain d1ggim1: 1ggi M:1-107 [19878]
      Other proteins in same PDB: d1ggih1, d1ggih2, d1ggij1, d1ggij2, d1ggil2, d1ggim2
      part of Fab 50.1
  11. Domain(s) for 1h0d:
  12. Domain(s) for 1i7z:
    1. 288004Domain d1i7za1: 1i7z A:1-107 [61919]
      Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zc2, d1i7zd1, d1i7zd2
    2. 288005Domain d1i7zc1: 1i7z C:1-107 [61923]
      Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zc2, d1i7zd1, d1i7zd2
      part of humanized Fab GNC92H2
      complexed with coc
  13. Domain(s) for 1ibg:
  14. Domain(s) for 1iqw:
  15. Domain(s) for 1mf2:
    1. 288008Domain d1mf2l1: 1mf2 L:1-107 [20174]
      Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
    2. 288009Domain d1mf2m1: 1mf2 M:1-107 [20176]
      Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
      part of Fab F11.2.32 against HIV-1 protease
  16. Domain(s) for 1moe:
    1. 288019Domain d1moea1: 1moe A:1-119 [85030]
      Other proteins in same PDB: d1moea2, d1moeb2
    2. 288020Domain d1moeb1: 1moe B:1-119 [85032]
      Other proteins in same PDB: d1moea2, d1moeb2
      part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
      complexed with so4
  17. Domain(s) for 1nsn:
  18. Domain(s) for 1qfw:
  19. Domain(s) for 1qnz:
  20. Domain(s) for 2f58:
  21. Domain(s) for 2hrp:
    1. 288002Domain d2hrpl1: 2hrp L:1-107 [20170]
      Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
    2. 288003Domain d2hrpm1: 2hrp M:1-107 [20172]
      Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
      part of Fab F11.2.32 against HIV-1 protease
  22. Domain(s) for 32c2:
  23. Domain(s) for 3f58:

More info for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: