Lineage for Species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
- Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds) 
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (5 families) 
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) 
Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (28 PDB entries)
PDB entries in Species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]:
- Domain(s) for 1acy:
Domain d1acyl1: 1acy L:1-108 [19884]
Other proteins in same PDB: d1acyh1, d1acyh2, d1acyl2
part of Fab 59.1
- Domain(s) for 1afv:
Domain d1afvl1: 1afv L:1-112 [20130]
Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
part of Fab 25.3 against HIV-1 capsid protein (p24)
complexed with pb
Domain d1afvm1: 1afv M:1-112 [20132]
Other proteins in same PDB: d1afva_, d1afvb_, d1afvh1, d1afvh2, d1afvk1, d1afvk2, d1afvl2, d1afvm2
part of Fab 25.3 against HIV-1 capsid protein (p24)
complexed with pb
- Domain(s) for 1ai1:
Domain d1ai1l1: 1ai1 L:1-108 [19882]
Other proteins in same PDB: d1ai1h1, d1ai1h2, d1ai1l2
part of Fab 59.1
- Domain(s) for 1egj:
Domain d1egjl1: 1egj L:1-107 [20500]
Other proteins in same PDB: d1egja_, d1egjh1, d1egjh2, d1egjl2
part of Fab 13B5 against cytokine receptor common beta chain domain 4
complexed with nag
- Domain(s) for 1ejo:
Domain d1ejol1: 1ejo L:2001-2111 [20428]
Other proteins in same PDB: d1ejoh1, d1ejoh2, d1ejol2
part of anti-FMDV Fab 4C4
- Domain(s) for 1f11:
- Domain(s) for 1f58:
Domain d1f58l1: 1f58 L:1-107 [20350]
Other proteins in same PDB: d1f58h1, d1f58h2, d1f58l2
part of anti-gp120 (HIV-1) Fab 58.2
- Domain(s) for 1ggb:
Domain d1ggbl1: 1ggb L:1-107 [19874]
Other proteins in same PDB: d1ggbh1, d1ggbh2, d1ggbh3, d1ggbl2
part of Fab 50.1
- Domain(s) for 1ggc:
Domain d1ggcl1: 1ggc L:1-107 [19880]
Other proteins in same PDB: d1ggch1, d1ggch2, d1ggch3, d1ggcl2
part of Fab 50.1
- Domain(s) for 1ggi:
- Domain(s) for 1h0d:
Domain d1h0da1: 1h0d A:1-106 [83425]
Other proteins in same PDB: d1h0da2, d1h0db1, d1h0db2, d1h0dc_
part of anti-angiogenin FAB; conflict: annotated in PDB as human
complexed with gol, so4
- Domain(s) for 1i7z:
Domain d1i7za1: 1i7z A:1-107 [61919]
Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zb3, d1i7zc2, d1i7zd1, d1i7zd2, d1i7zd3
part of humanized Fab GNC92H2
complexed with coc
Domain d1i7zc1: 1i7z C:1-107 [61923]
Other proteins in same PDB: d1i7za2, d1i7zb1, d1i7zb2, d1i7zb3, d1i7zc2, d1i7zd1, d1i7zd2, d1i7zd3
part of humanized Fab GNC92H2
complexed with coc
- Domain(s) for 1ibg:
Domain d1ibgl1: 1ibg L:2-107 [20048]
Other proteins in same PDB: d1ibgh1, d1ibgh2, d1ibgl2
part of Fab 40-50
complexed with cu, obn
- Domain(s) for 1iqw:
Domain d1iqwl1: 1iqw L:1-111 [66279]
Other proteins in same PDB: d1iqwh1, d1iqwh2, d1iqwh3, d1iqwl2
part of anti-human Fas Fab HFE7a
- Domain(s) for 1j05:
Domain d1j05a_: 1j05 A: [90735]
Other proteins in same PDB: d1j05b_, d1j05h_
part of anti-CEA Fv T84.66
complexed with gol, po4
Domain d1j05l_: 1j05 L: [90738]
Other proteins in same PDB: d1j05b_, d1j05h_
part of anti-CEA Fv T84.66
complexed with gol, po4
- Domain(s) for 1mf2:
Domain d1mf2l1: 1mf2 L:1-107 [20174]
Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
part of Fab F11.2.32 against HIV-1 protease
Domain d1mf2m1: 1mf2 M:1-107 [20176]
Other proteins in same PDB: d1mf2h1, d1mf2h2, d1mf2l2, d1mf2m2, d1mf2n1, d1mf2n2
part of Fab F11.2.32 against HIV-1 protease
- Domain(s) for 1moe:
Domain d1moea1: 1moe A:1-119 [85030]
Other proteins in same PDB: d1moea2, d1moeb2
part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
complexed with so4
Domain d1moeb1: 1moe B:1-119 [85032]
Other proteins in same PDB: d1moea2, d1moeb2
part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
complexed with so4
- Domain(s) for 1nsn:
Domain d1nsnl1: 1nsn L:1-107 [20070]
Other proteins in same PDB: d1nsnh1, d1nsnh2, d1nsnl2, d1nsns_
part of Fab N10
- Domain(s) for 1qfw:
- Domain(s) for 1qnz:
Domain d1qnzl1: 1qnz L:1-111 [20448]
Other proteins in same PDB: d1qnzh_, d1qnzl2
part of anti-HIV Fv 0.5B
- Domain(s) for 2aab:
Domain d2aabl1: 2aab L:1-107 [144795]
Other proteins in same PDB: d2aabh1, d2aabl2
- Domain(s) for 2f58:
Domain d2f58l1: 2f58 L:1-107 [20354]
Other proteins in same PDB: d2f58h1, d2f58h2, d2f58l2
part of anti-gp120 (HIV-1) Fab 58.2
complexed with arn
- Domain(s) for 2gsi:
Domain d2gsia1: 2gsi A:1-107 [135579]
Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
automatically matched to d1egjl1
complexed with na
Domain d2gsic1: 2gsi C:1-107 [135581]
Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
automatically matched to d1egjl1
complexed with na
Domain d2gsie1: 2gsi E:1-107 [135583]
Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
automatically matched to d1egjl1
complexed with na
Domain d2gsig1: 2gsi G:1-107 [135585]
Other proteins in same PDB: d2gsia2, d2gsib1, d2gsib2, d2gsic2, d2gsid1, d2gsid2, d2gsie2, d2gsif1, d2gsif2, d2gsig2, d2gsih1, d2gsih2
automatically matched to d1egjl1
complexed with na
- Domain(s) for 2hrp:
Domain d2hrpl1: 2hrp L:1-107 [20170]
Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
part of Fab F11.2.32 against HIV-1 protease
Domain d2hrpm1: 2hrp M:1-107 [20172]
Other proteins in same PDB: d2hrph1, d2hrph2, d2hrpl2, d2hrpm2, d2hrpn1, d2hrpn2
part of Fab F11.2.32 against HIV-1 protease
- Domain(s) for 2nz9:
Domain d2nz9c1: 2nz9 C:2-111 [138840]
Other proteins in same PDB: d2nz9c2, d2nz9d1, d2nz9d2, d2nz9d3, d2nz9e2, d2nz9f1, d2nz9f2, d2nz9f3
automatically matched to d1egjl1
complexed with ca, zn
Domain d2nz9e1: 2nz9 E:2-111 [138844]
Other proteins in same PDB: d2nz9c2, d2nz9d1, d2nz9d2, d2nz9d3, d2nz9e2, d2nz9f1, d2nz9f2, d2nz9f3
automatically matched to d1egjl1
complexed with ca, zn
- Domain(s) for 2r69:
Domain d2r69l1: 2r69 L:1-111 [151602]
Other proteins in same PDB: d2r69a1, d2r69l2
automatically matched to d1ejol1
- Domain(s) for 32c2:
Domain d32c2a1: 32c2 A:1-110 [20438]
Other proteins in same PDB: d32c2a2, d32c2b1, d32c2b2
part of the cytochrome P450-arom activity suppressing Fab 32C2
- Domain(s) for 3f58:
Domain d3f58l1: 3f58 L:1-107 [20352]
Other proteins in same PDB: d3f58h1, d3f58h2, d3f58l2
part of anti-gp120 (HIV-1) Fab 58.2
mutant
More info for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa
Timeline for Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa:
- Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa first appeared in SCOP 1.65
- Species Mouse (Mus musculus), cluster 2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa appears in SCOPe 2.07