Lineage for Species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1103263Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1104358Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (15 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1104739Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (36 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]:

  1. Domain(s) for 1a3r:
  2. Domain(s) for 1a5f:
  3. Domain(s) for 1ap2:
    1. 1104774Domain d1ap2a_: 1ap2 A: [20182]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
    2. 1104775Domain d1ap2c_: 1ap2 C: [20184]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
  4. Domain(s) for 1bbd:
  5. Domain(s) for 1ck0:
  6. Domain(s) for 1frg:
  7. Domain(s) for 1h3p:
  8. Domain(s) for 1hil:
    1. 1104753Domain d1hila1: 1hil A:1-108 [19786]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
    2. 1104754Domain d1hilc1: 1hil C:1-108 [19788]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
  9. Domain(s) for 1him:
    1. 1104781Domain d1himh1: 1him H:1-108 [19793]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
    2. 1104782Domain d1himj1: 1him J:1-108 [19795]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
  10. Domain(s) for 1hin:
  11. Domain(s) for 1ifh:
  12. Domain(s) for 1il1:
  13. Domain(s) for 1mcp:
  14. Domain(s) for 1mhh:
    1. 1104755Domain d1mhha1: 1mhh A:1-107 [79119]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with edo
    2. 1104756Domain d1mhhc1: 1mhh C:1-107 [79123]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with edo
  15. Domain(s) for 1mvu:
    • 1104744Domain d1mvua_: 1mvu A: [91474]
      Other proteins in same PDB: d1mvub_
      part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
      complexed with so4; mutant
  16. Domain(s) for 1n64:
  17. Domain(s) for 1nlb:
  18. Domain(s) for 1pkq:
    1. 1104787Domain d1pkqa1: 1pkq A:1-107 [88148]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
      part of humanized Fab 8-18c5
    2. 1104788Domain d1pkqf1: 1pkq F:1-107 [88153]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
      part of humanized Fab 8-18c5
  19. Domain(s) for 1q9k:
  20. Domain(s) for 1q9l:
    1. 1104769Domain d1q9la1: 1q9l A:1-107 [96280]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
    2. 1104770Domain d1q9lc1: 1q9l C:1-107 [96284]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
  21. Domain(s) for 1q9o:
    1. 1104749Domain d1q9oa1: 1q9o A:1-107 [96292]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
      part of Fab s45-18
      complexed with mg
    2. 1104750Domain d1q9oc1: 1q9o C:1-107 [96296]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
      part of Fab s45-18
      complexed with mg
  22. Domain(s) for 1q9w:
    1. 1104745Domain d1q9wa1: 1q9w A:1-107 [96320]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
      part of Fab s45-18
      complexed with mg
    2. 1104746Domain d1q9wc1: 1q9w C:1-107 [96324]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
      part of Fab s45-18
      complexed with mg
  23. Domain(s) for 1sbs:
  24. Domain(s) for 1t4k:
    1. 1104790Domain d1t4ka1: 1t4k A:1-107 [112235]
      Other proteins in same PDB: d1t4ka2, d1t4kb1, d1t4kb2, d1t4kc2, d1t4kd1, d1t4kd2
      MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
    2. 1104791Domain d1t4kc1: 1t4k C:1-107 [112239]
      Other proteins in same PDB: d1t4ka2, d1t4kb1, d1t4kb2, d1t4kc2, d1t4kd1, d1t4kd2
      MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
  25. Domain(s) for 2ap2:
    1. 1104772Domain d2ap2a_: 2ap2 A: [20178]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
    2. 1104773Domain d2ap2c_: 2ap2 C: [20180]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
  26. Domain(s) for 2ck0:
  27. Domain(s) for 2dtg:
  28. Domain(s) for 2imm:
    • 1104747Domain d2imma_: 2imm A: [19857]
      VL domain only of MCPC603
      complexed with act, so4; mutant
  29. Domain(s) for 2mcp:
  30. Domain(s) for 3ck0:
  31. Domain(s) for 3sy0:
  32. Domain(s) for 3t4y:
  33. Domain(s) for 3t65:
  34. Domain(s) for 3t77:
  35. Domain(s) for 43c9:
    1. 1104760Domain d43c9a_: 43c9 A: [20386]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    2. 1104761Domain d43c9c_: 43c9 C: [20388]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    3. 1104762Domain d43c9e_: 43c9 E: [20390]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    4. 1104763Domain d43c9g_: 43c9 G: [20392]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
  36. Domain(s) for 43ca:
    1. 1104765Domain d43caa_: 43ca A: [20394]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    2. 1104766Domain d43cac_: 43ca C: [20396]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    3. 1104767Domain d43cae_: 43ca E: [20398]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    4. 1104768Domain d43cag_: 43ca G: [20400]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo

More info for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: