Lineage for Species: Mouse (Mus musculus), cluster 1.2

  1. Root: SCOP 1.69
  2. 450777Class b: All beta proteins [48724] (144 folds)
  3. 450778Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 450779Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 450780Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins)
  6. 451612Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 451904Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (34 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1.2:

  1. Domain(s) for 1a3r:
  2. Domain(s) for 1a5f:
  3. Domain(s) for 1ap2:
    1. 451938Domain d1ap2a_: 1ap2 A: [20182]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
    2. 451939Domain d1ap2c_: 1ap2 C: [20184]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
  4. Domain(s) for 1bbd:
  5. Domain(s) for 1ck0:
  6. Domain(s) for 1frg:
  7. Domain(s) for 1h3p:
  8. Domain(s) for 1hil:
    1. 451918Domain d1hila1: 1hil A:1-108 [19786]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
    2. 451919Domain d1hilc1: 1hil C:1-108 [19788]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
  9. Domain(s) for 1him:
    1. 451945Domain d1himh1: 1him H:1-108 [19793]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
    2. 451946Domain d1himj1: 1him J:1-108 [19795]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
  10. Domain(s) for 1hin:
  11. Domain(s) for 1ifh:
  12. Domain(s) for 1il1:
  13. Domain(s) for 1mcp:
  14. Domain(s) for 1mhh:
    1. 451920Domain d1mhha1: 1mhh A:1-107 [79119]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
    2. 451921Domain d1mhhc1: 1mhh C:1-107 [79123]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
  15. Domain(s) for 1mvu:
    • 451909Domain d1mvua_: 1mvu A: [91474]
      Other proteins in same PDB: d1mvub_
      part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
  16. Domain(s) for 1n64:
  17. Domain(s) for 1nlb:
  18. Domain(s) for 1pkq:
    1. 451952Domain d1pkqa1: 1pkq A:1-107 [88148]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
    2. 451953Domain d1pkqf1: 1pkq F:1-107 [88153]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
      part of humanized Fab 8-18c5
  19. Domain(s) for 1q9k:
  20. Domain(s) for 1q9l:
    1. 451929Domain d1q9la1: 1q9l A:1-107 [96280]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
    2. 451930Domain d1q9lc1: 1q9l C:1-107 [96284]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
      part of Fab s25-2
  21. Domain(s) for 1q9o:
    1. 451914Domain d1q9oa1: 1q9o A:1-107 [96292]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
    2. 451915Domain d1q9oc1: 1q9o C:1-107 [96296]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
      part of Fab s45-18
  22. Domain(s) for 1q9q:
  23. Domain(s) for 1q9r:
  24. Domain(s) for 1q9t:
  25. Domain(s) for 1q9v:
  26. Domain(s) for 1q9w:
    1. 451911Domain d1q9wa1: 1q9w A:1-107 [96320]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
    2. 451912Domain d1q9wc1: 1q9w C:1-107 [96324]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
      part of Fab s45-18
  27. Domain(s) for 1sbs:
  28. Domain(s) for 2ap2:
    1. 451936Domain d2ap2a_: 2ap2 A: [20178]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
    2. 451937Domain d2ap2c_: 2ap2 C: [20180]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
  29. Domain(s) for 2ck0:
  30. Domain(s) for 2imm:
  31. Domain(s) for 2mcp:
  32. Domain(s) for 3ck0:
  33. Domain(s) for 43c9:
    1. 451925Domain d43c9a_: 43c9 A: [20386]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    2. 451926Domain d43c9c_: 43c9 C: [20388]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    3. 451927Domain d43c9e_: 43c9 E: [20390]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    4. 451928Domain d43c9g_: 43c9 G: [20392]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
  34. Domain(s) for 43ca:
    1. 451931Domain d43caa_: 43ca A: [20394]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    2. 451932Domain d43cac_: 43ca C: [20396]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    3. 451933Domain d43cae_: 43ca E: [20398]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    4. 451934Domain d43cag_: 43ca G: [20400]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9

More info for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: