Lineage for Species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018687Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (51 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]:

  1. Domain(s) for 1a3r:
  2. Domain(s) for 1a5f:
  3. Domain(s) for 1ap2:
    1. 2018735Domain d1ap2a_: 1ap2 A: [20182]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
    2. 2018736Domain d1ap2c_: 1ap2 C: [20184]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
  4. Domain(s) for 1bbd:
  5. Domain(s) for 1ck0:
  6. Domain(s) for 1frg:
  7. Domain(s) for 1gm3:
  8. Domain(s) for 1h3p:
  9. Domain(s) for 1hil:
    1. 2018712Domain d1hila1: 1hil A:1-108 [19786]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
    2. 2018713Domain d1hilc1: 1hil C:1-108 [19788]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
  10. Domain(s) for 1him:
    1. 2018751Domain d1himh1: 1him H:1-108 [19793]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
    2. 2018752Domain d1himj1: 1him J:1-108 [19795]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
  11. Domain(s) for 1hin:
  12. Domain(s) for 1ifh:
  13. Domain(s) for 1il1:
  14. Domain(s) for 1mcp:
  15. Domain(s) for 1mhh:
    1. 2018715Domain d1mhha1: 1mhh A:1-107 [79119]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with edo
    2. 2018716Domain d1mhhc1: 1mhh C:1-107 [79123]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with edo
  16. Domain(s) for 1mvu:
    • 2018701Domain d1mvua_: 1mvu A: [91474]
      Other proteins in same PDB: d1mvub_
      part of P-glycoprotein-specific scFv C219; complexed with synthetic epitope peptide, chain P
      complexed with so4; mutant
  17. Domain(s) for 1n64:
  18. Domain(s) for 1nlb:
  19. Domain(s) for 1pkq:
    1. 2018749Domain d1pkqa1: 1pkq A:1-107 [88148]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe1, d1pkqe2, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj1, d1pkqj2
      part of humanized Fab 8-18c5
    2. 2018750Domain d1pkqf1: 1pkq F:1-107 [88153]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe1, d1pkqe2, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj1, d1pkqj2
      part of humanized Fab 8-18c5
  20. Domain(s) for 1q9k:
  21. Domain(s) for 1q9l:
    1. 2018729Domain d1q9la1: 1q9l A:1-107 [96280]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
    2. 2018730Domain d1q9lc1: 1q9l C:1-107 [96284]
      Other proteins in same PDB: d1q9la2, d1q9lb1, d1q9lb2, d1q9lc2, d1q9ld1, d1q9ld2
      part of Fab s25-2
      complexed with mg, zn
  22. Domain(s) for 1q9o:
    1. 2018707Domain d1q9oa1: 1q9o A:1-107 [96292]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
      part of Fab s45-18
      complexed with mg
    2. 2018708Domain d1q9oc1: 1q9o C:1-107 [96296]
      Other proteins in same PDB: d1q9oa2, d1q9ob1, d1q9ob2, d1q9oc2, d1q9od1, d1q9od2
      part of Fab s45-18
      complexed with mg
  23. Domain(s) for 1q9q:
  24. Domain(s) for 1q9r:
  25. Domain(s) for 1q9t:
  26. Domain(s) for 1q9v:
  27. Domain(s) for 1q9w:
    1. 2018703Domain d1q9wa1: 1q9w A:1-107 [96320]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
      part of Fab s45-18
      complexed with mg
    2. 2018704Domain d1q9wc1: 1q9w C:1-107 [96324]
      Other proteins in same PDB: d1q9wa2, d1q9wb1, d1q9wb2, d1q9wc2, d1q9wd1, d1q9wd2
      part of Fab s45-18
      complexed with mg
  28. Domain(s) for 1sbs:
  29. Domain(s) for 1t4k:
    1. 2018754Domain d1t4ka1: 1t4k A:1-107 [112235]
      Other proteins in same PDB: d1t4ka2, d1t4kb1, d1t4kb2, d1t4kc2, d1t4kd1, d1t4kd2
      MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
    2. 2018755Domain d1t4kc1: 1t4k C:1-107 [112239]
      Other proteins in same PDB: d1t4ka2, d1t4kb1, d1t4kb2, d1t4kc2, d1t4kd1, d1t4kd2
      MQ P01632 P01837 # natural chimera; catalytic antibody with aldolase activity
      complexed with zn
  30. Domain(s) for 1ymh:
    1. 2018743Domain d1ymha1: 1ymh A:1-107 [197663]
      Other proteins in same PDB: d1ymha2, d1ymhb1, d1ymhb2, d1ymhc2, d1ymhd1, d1ymhd2, d1ymhe_, d1ymhf_
      automated match to d1nlbl1
      mutant
    2. 2018744Domain d1ymhc1: 1ymh C:1-107 [197667]
      Other proteins in same PDB: d1ymha2, d1ymhb1, d1ymhb2, d1ymhc2, d1ymhd1, d1ymhd2, d1ymhe_, d1ymhf_
      automated match to d1nlbl1
      mutant
  31. Domain(s) for 2ap2:
    1. 2018732Domain d2ap2a_: 2ap2 A: [20178]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
    2. 2018733Domain d2ap2c_: 2ap2 C: [20180]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
  32. Domain(s) for 2ck0:
  33. Domain(s) for 2dtg:
  34. Domain(s) for 2imm:
    • 2018705Domain d2imma_: 2imm A: [19857]
      VL domain only of MCPC603
      complexed with act, so4; mutant
  35. Domain(s) for 2mcp:
  36. Domain(s) for 2r1w:
  37. Domain(s) for 2r1x:
  38. Domain(s) for 2r1y:
  39. Domain(s) for 2r23:
  40. Domain(s) for 2r2b:
  41. Domain(s) for 2r2e:
  42. Domain(s) for 2r2h:
  43. Domain(s) for 3bpc:
  44. Domain(s) for 3ck0:
  45. Domain(s) for 3sy0:
  46. Domain(s) for 3t4y:
  47. Domain(s) for 3t65:
  48. Domain(s) for 3t77:
  49. Domain(s) for 43c9:
    1. 2018720Domain d43c9a_: 43c9 A: [20386]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    2. 2018721Domain d43c9c_: 43c9 C: [20388]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    3. 2018722Domain d43c9e_: 43c9 E: [20390]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
    4. 2018723Domain d43c9g_: 43c9 G: [20392]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
  50. Domain(s) for 43ca:
    1. 2018725Domain d43caa_: 43ca A: [20394]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    2. 2018726Domain d43cac_: 43ca C: [20396]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    3. 2018727Domain d43cae_: 43ca E: [20398]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
    4. 2018728Domain d43cag_: 43ca G: [20400]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo
  51. Domain(s) for 4hgw:

More info for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: