Class b: All beta proteins [48724] (126 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (4 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins) |
Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species) VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (98 PDB entries) |
Domain d1a3ll1: 1a3l L:1-107 [20240] Other proteins in same PDB: d1a3lh1, d1a3lh2, d1a3ll2 part of Diels-Alder catalytic Fab 13G5 complexed with cfc |
Domain d1a4ka1: 1a4k A:1-112 [20236] Other proteins in same PDB: d1a4ka2, d1a4kb1, d1a4kb2, d1a4kh1, d1a4kh2, d1a4kl2 part of humanized Diels-Alder catalytic Fab complexed with cd, fra |
Domain d1a4kl1: 1a4k L:1-112 [20234] Other proteins in same PDB: d1a4ka2, d1a4kb1, d1a4kb2, d1a4kh1, d1a4kh2, d1a4kl2 |
Domain d1ae6l1: 1ae6 L:1-106A [20210] Other proteins in same PDB: d1ae6h1, d1ae6h2, d1ae6l2 part of Fab CTM01 |
Domain d1axtl1: 1axt L:1-107 [20304] Other proteins in same PDB: d1axth1, d1axth2, d1axtl2 part of catalytic Fab 33F12 with an aldolase activity |
Domain d1bfvl_: 1bfv L: [20162] Other proteins in same PDB: d1bfvh_ part of Fv 4155 complexed with stg, zn |
Domain d1c1el1: 1c1e L:1-112 [20238] Other proteins in same PDB: d1c1eh1, d1c1eh2, d1c1el2 part of Diels-Alder catalytic Fab 1E9 complexed with dmr, enh |
Domain d1cbvl1: 1cbv L:1-112 [19900] Other proteins in same PDB: d1cbvh1, d1cbvh2, d1cbvl2 part of Fab BV04-01 |
Domain d1cfvl_: 1cfv L: [20160] Other proteins in same PDB: d1cfvh_ part of Fv 4155 complexed with e3g, zn |
Domain d1cgsl1: 1cgs L:1-112 [19920] Other proteins in same PDB: d1cgsh1, d1cgsh2, d1cgsl2 part of an anti-sweetener Fab |
Domain d1cl7l1: 1cl7 L:1-107 [20418] Other proteins in same PDB: d1cl7.1, d1cl7h1, d1cl7l2 part of Fab 1696 against HIV-1 protease |
Domain d1clyl1: 1cly L:3-108 [20102] Other proteins in same PDB: d1clyh1, d1clyh2, d1clyl2 part of humanized Fab CBR96 complexed with fuc, gal, nag, non |
Domain d1clzl1: 1clz L:1-108 [20104] Other proteins in same PDB: d1clzh1, d1clzh2, d1clzl2 part of Fab MBR96 complexed with fuc, gal, nag, non |
Domain d1cr9l1: 1cr9 L:1-106A [20430] Other proteins in same PDB: d1cr9h1, d1cr9h2, d1cr9l2 part of anti-prion Fab 3F4 |
Domain d1cu4l1: 1cu4 L:1-106A [20432] Other proteins in same PDB: d1cu4h1, d1cu4h2, d1cu4l2 part of anti-prion Fab 3F4 |
Domain d1dbal1: 1dba L:1-107 [19802] Other proteins in same PDB: d1dbah1, d1dbah2, d1dbal2 part of Fab DB3 complexed with eoh |
Domain d1dbbl1: 1dbb L:1-107 [19798] Other proteins in same PDB: d1dbbh1, d1dbbh2, d1dbbl2 part of Fab DB3 complexed with str |
Domain d1dbjl1: 1dbj L:1-107 [19800] Other proteins in same PDB: d1dbjh1, d1dbjh2, d1dbjl2 part of Fab DB3 complexed with ae2 |
Domain d1dbkl1: 1dbk L:1-107 [19806] Other proteins in same PDB: d1dbkh1, d1dbkh2, d1dbkl2 part of Fab DB3 complexed with ano |
Domain d1dbml1: 1dbm L:1-107 [19804] Other proteins in same PDB: d1dbmh1, d1dbmh2, d1dbml2 part of Fab DB3 complexed with sih |
Domain d1dlfl_: 1dlf L: [20382] Other proteins in same PDB: d1dlfh_ part of anti-dansyl Fv complexed with so4 |
Domain d1dsfl_: 1dsf L: [20246] Other proteins in same PDB: d1dsfh_ part of anticancer Fv B1; disulfide-stabilized mutant |
Domain d1ehll1: 1ehl L:1-107 [20502] Other proteins in same PDB: d1ehlh1, d1ehlh2, d1ehll2 part of anti-photoproduct Fab 64M-2 complexed with 5ht |
Domain d1f8tl1: 1f8t L:1-107 [59707] Other proteins in same PDB: d1f8th1, d1f8th2, d1f8tl2 part of anti-IL2 Fab LNKB-2 |
Domain d1f90l1: 1f90 L:1-107 [59711] Other proteins in same PDB: d1f90h1, d1f90h2, d1f90l2 part of anti-IL2 Fab LNKB-2 |
Domain d1fl5a1: 1fl5 A:1-107 [65015] Other proteins in same PDB: d1fl5a2, d1fl5b1, d1fl5b2, d1fl5h1, d1fl5h2, d1fl5l2 part of humanized catalytic Fab Fab 28b4 with a sulfide oxidase activity complexed with so4; mutant |
Domain d1fl5l1: 1fl5 L:1-107 [65021] Other proteins in same PDB: d1fl5a2, d1fl5b1, d1fl5b2, d1fl5h1, d1fl5h2, d1fl5l2 |
Domain d1fl6a1: 1fl6 A:1-107 [65023] Other proteins in same PDB: d1fl6a2, d1fl6b1, d1fl6b2, d1fl6h1, d1fl6h2, d1fl6l2 part of humanized catalytic Fab Fab 28b4 with a sulfide oxidase activity complexed with aah; mutant |
Domain d1fl6l1: 1fl6 L:1-107 [65029] Other proteins in same PDB: d1fl6a2, d1fl6b1, d1fl6b2, d1fl6h1, d1fl6h2, d1fl6l2 |
Domain d1flrl1: 1flr L:1-112 [19904] Other proteins in same PDB: d1flrh1, d1flrh2, d1flrl2 part of Fab 4-4-20 complexed with flu |
Domain d1fptl1: 1fpt L:1-108 [20030] Other proteins in same PDB: d1fpth1, d1fpth2, d1fptl2 part of neutralizing type 1 poliovirus Fab C3 |
Domain d1hyxl1: 1hyx L:1-107 [20166] Other proteins in same PDB: d1hyxh1, d1hyxh2, d1hyxl2 part of hydrolytic antibody 6D9 complexed with cpd |
Domain d1hyyl1: 1hyy L:1-107 [20168] Other proteins in same PDB: d1hyyh1, d1hyyh2, d1hyyl2 part of hydrolytic antibody 6D9 complexed with cpd |
Domain d1i9il1: 1i9i L:1-112 [71142] Other proteins in same PDB: d1i9ih1, d1i9ih2, d1i9il2 part of anti-testosterone Fab |
Domain d1i9jl1: 1i9j L:1-112 [71146] Other proteins in same PDB: d1i9jh1, d1i9jh2, d1i9jl2 part of anti-testosterone Fab complexed with tes |
Domain d1igil1: 1igi L:1-107 [19822] Other proteins in same PDB: d1igih1, d1igih2, d1igil2 part of Fab 26-10 |
Domain d1jgul1: 1jgu L:1-107 [66690] Other proteins in same PDB: d1jguh1, d1jguh2, d1jgul2 part of catalytic Fab 1D4 complexed with hbc, oh |
Domain d1jgvl1: 1jgv L:1-107 [66694] Other proteins in same PDB: d1jgvh1, d1jgvh2, d1jgvl2 part of catalytic Fab 1D4 |
Domain d1jp5a1: 1jp5 A:1-112 [67001] Other proteins in same PDB: d1jp5a2, d1jp5b2 |
Domain d1jp5b1: 1jp5 B:1-112 [67003] Other proteins in same PDB: d1jp5a2, d1jp5b2 part of scFv 1695; complexed with the epitope peptide from HIV-1 protease |
Domain d1kegl1: 1keg L:1-107 [77347] Other proteins in same PDB: d1kegh1, d1kegh2, d1kegl2 part of anti-photoproduct Fab 64M-2 complexed with 64t, ni |
Domain d1kell1: 1kel L:1-112 [20112] Other proteins in same PDB: d1kelh1, d1kelh2, d1kell2 part of Fab 28B4 complexed with aah |
Domain d1keml1: 1kem L:1-112 [20114] Other proteins in same PDB: d1kemh1, d1kemh2, d1keml2 part of Fab 28B4 |
Domain d1kfal1: 1kfa L:1-112 [77365] Other proteins in same PDB: d1kfah1, d1kfah2, d1kfai1, d1kfai2, d1kfal2, d1kfam2 |
Domain d1kfam1: 1kfa M:1-112 [77367] Other proteins in same PDB: d1kfah1, d1kfah2, d1kfai1, d1kfai2, d1kfal2, d1kfam2 part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein complexed with ga4 |
Domain d1kn2l1: 1kn2 L:1-107 [72762] Other proteins in same PDB: d1kn2h1, d1kn2h2, d1kn2l2 part of Fab D2.3 complexed with pne, zn |
Domain d1kn4l1: 1kn4 L:1-107 [72767] Other proteins in same PDB: d1kn4h1, d1kn4h2, d1kn4l2 part of Fab D2.3 complexed with pde, zn |
Domain d1ktrl_: 1ktr L: [72993] Other proteins in same PDB: d1ktrh_ part of scFv 3d5 mutant |
Domain d1l7sl1: 1l7s L:1-112 [77797] Other proteins in same PDB: d1l7sh1, d1l7sh2, d1l7sl2 part of anti-testosterone Fab 77 |
Domain d1l7tl1: 1l7t L:1-112 [77801] Other proteins in same PDB: d1l7th1, d1l7th2, d1l7tl2 part of anti-testosterone Fab 77 |
Domain d1lmka2: 1lmk A:201-312 [20035] Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1 |
Domain d1lmkc2: 1lmk C:201-312 [20037] Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1 |
Domain d1lmke2: 1lmk E:201-312 [20039] Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1 |
Domain d1lmkg2: 1lmk G:201-312 [20041] Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1 part of scFv diabody L5MK16 |
Domain d1lo4l1: 1lo4 L:1-112 [74141] Other proteins in same PDB: d1lo4h1, d1lo4h2, d1lo4l2 part of retro Diels-Alder catalytic Fab 9D9 |
Domain d1m71a1: 1m71 A:1-108 [84851] Other proteins in same PDB: d1m71a2, d1m71b1, d1m71b2 part of Fab specific for Y lipopolysaccharide |
Domain d1m7da1: 1m7d A:1-108 [84861] Other proteins in same PDB: d1m7da2, d1m7db1, d1m7db2 part of Fab specific for Y lipopolysaccharide complexed with 1na, raa, rae |
Domain d1m7ia1: 1m7i A:1-108 [84865] Other proteins in same PDB: d1m7ia2, d1m7ib1, d1m7ib2 part of Fab specific for Y lipopolysaccharide complexed with nag, raa, rao |
Domain d1maj__: 1maj - [19824] VL of antibody 26-10 only |
Domain d1mak__: 1mak - [19825] VL of antibody 26-10 only |
Domain d1mnul1: 1mnu L:1-112 [20358] Other proteins in same PDB: d1mnuh1, d1mnuh2, d1mnul2 part of bactericidal Fab MN12H2 against Neisseria meningitidis complexed with cd1 |
Domain d1mpal1: 1mpa L:1-112 [20134] Other proteins in same PDB: d1mpah1, d1mpah2, d1mpal2 part of bactericidal Fab MN12H2 against Neisseria meningitidis complexed with cd, cyf, thc |
Domain d1mrcl1: 1mrc L:1-108 [20022] Other proteins in same PDB: d1mrch1, d1mrch2, d1mrcl2 part of Fab Jel 103 complexed with imd, so4, zn |
Domain d1mrdl1: 1mrd L:1-108 [20016] Other proteins in same PDB: d1mrdh1, d1mrdh2, d1mrdl2 part of Fab Jel 103 complexed with idp, imd, zn |
Domain d1mrel1: 1mre L:1-108 [20018] Other proteins in same PDB: d1mreh1, d1mreh2, d1mrel2 part of Fab Jel 103 complexed with gdp, imd, zn |
Domain d1mrfl1: 1mrf L:1-108 [20020] Other proteins in same PDB: d1mrfh1, d1mrfh2, d1mrfl2 part of Fab Jel 103 complexed with imd, oip, zn |
Domain d1n4xl_: 1n4x L: [85326] Other proteins in same PDB: d1n4xh_, d1n4xi_ |
Domain d1n4xm_: 1n4x M: [85327] Other proteins in same PDB: d1n4xh_, d1n4xi_ part of scFv 1695 complexed with cl |
Domain d1nbvl1: 1nbv L:1-112 [19898] Other proteins in same PDB: d1nbvh1, d1nbvh2, d1nbvl2 part of Fab BV04-01 |
Domain d1ncwl1: 1ncw L:1-107 [85557] Other proteins in same PDB: d1ncwh1, d1ncwh2, d1ncwl2 part of cationic cyclization catalytic Fab 4C6 complexed with bez, gol |
Domain d1nd0a1: 1nd0 A:1-107 [85559] Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2 |
Domain d1nd0c1: 1nd0 C:1-107 [85563] Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2 |
Domain d1nd0e1: 1nd0 E:1-107 [85567] Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2 |
Domain d1nd0g1: 1nd0 G:1-107 [85571] Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2 part of cationic cyclization catalytic Fab 4C6 complexed with dp4, so4 |
Domain d1nldl1: 1nld L:1-107 [20110] Other proteins in same PDB: d1nldh1, d1nldh2, d1nldl2 part of Fab 1583 |
Domain d1nqba2: 1nqb A:121-233 [20043] Other proteins in same PDB: d1nqba1, d1nqbc1 |
Domain d1nqbc2: 1nqb C:121-233 [20045] Other proteins in same PDB: d1nqba1, d1nqbc1 part of scFv trivalent antibody; N-terminal, VH domain is from B1-8 antibody (1A6U CH H); C-terminal, VL domain is from NQ11 antibody |
Domain d1plgl1: 1plg L:1-112 [20080] Other proteins in same PDB: d1plgh1, d1plgh2, d1plgl2 part of a polysialic acid-binding Fab |
Domain d1qkzl1: 1qkz L:1-107 [20136] Other proteins in same PDB: d1qkza_, d1qkzh1, d1qkzh2, d1qkzl2 part of Fab MN14C11.6 |
Domain d1rmfl1: 1rmf L:1-112 [20028] Other proteins in same PDB: d1rmfh1, d1rmfh2, d1rmfl2 part of Fab R6.5 |
Domain d1tetl1: 1tet L:1-107 [19902] Other proteins in same PDB: d1teth1, d1teth2, d1tetl2 part of Fab TE33 complexed with cit |
Domain d1ucbl1: 1ucb L:4-108 [20100] Other proteins in same PDB: d1ucbh1, d1ucbh2, d1ucbl2 part of humanized Fab CBR96 complexed with so4 |
Domain d1yecl1: 1yec L:1-107 [20144] Other proteins in same PDB: d1yech1, d1yech2, d1yecl2 part of Fab D2.3 complexed with pnb, zn |
Domain d1yeel1: 1yee L:1-107 [20156] Other proteins in same PDB: d1yeeh1, d1yeeh2, d1yeel2 part of Fab D2.5 complexed with pnb |
Domain d1yefl1: 1yef L:1-107 [20152] Other proteins in same PDB: d1yefh1, d1yefh2, d1yefl2 part of Fab D2.5 complexed with pnc, zn |
Domain d1yegl1: 1yeg L:1-107 [20154] Other proteins in same PDB: d1yegh1, d1yegh2, d1yegl2 part of Fab D2.5 complexed with act, bpn, zn |
Domain d1yehl1: 1yeh L:1-107 [20158] Other proteins in same PDB: d1yehh1, d1yehh2, d1yehl2 part of Fab D2.5 complexed with zn |
Domain d1yeil1: 1yei L:1-107 [20142] Other proteins in same PDB: d1yeih1, d1yeih2, d1yeil2 part of Fab D2.3 complexed with pnp, zn |
Domain d1yejl1: 1yej L:1-107 [20140] Other proteins in same PDB: d1yejh1, d1yejh2, d1yejl2 part of Fab D2.3 complexed with pnp, zn |
Domain d1yekl1: 1yek L:1-107 [20146] Other proteins in same PDB: d1yekh1, d1yekh2, d1yekl2 part of Fab D2.3 complexed with pnp, zn |
Domain d2bfvl_: 2bfv L: [20164] Other proteins in same PDB: d2bfvh_ part of Fv 4155 complexed with stg |
Domain d2cgrl1: 2cgr L:1-112 [19918] Other proteins in same PDB: d2cgrh1, d2cgrh2, d2cgrl2 part of an anti-sweetener Fab complexed with gas |
Domain d2dbll1: 2dbl L:1-107 [19808] Other proteins in same PDB: d2dblh1, d2dblh2, d2dbll2 part of Fab DB3 complexed with s5h |
Domain d2dlfl_: 2dlf L: [20384] Other proteins in same PDB: d2dlfh_ part of anti-dansyl Fv |
Domain d2h1pl1: 2h1p L:1-113 [20190] Other proteins in same PDB: d2h1ph1, d2h1ph2, d2h1pl2 part of polysaccharide binding antibody 2H1 |
Domain d2igfl1: 2igf L:1-107 [19816] Other proteins in same PDB: d2igfh1, d2igfh2, d2igfl2 part of Fab B13I2 complexed with nag |
Domain d2jell1: 2jel L:1-108 [19978] Other proteins in same PDB: d2jelh1, d2jelh2, d2jell2, d2jelp_ part of Fab JE142 complexed with so4 |
Domain d2mpal1: 2mpa L:1-112 [20356] Other proteins in same PDB: d2mpah1, d2mpah2, d2mpal2 part of bactericidal Fab MN12H2 against Neisseria meningitidis complexed with cd, cyf, thc |
Domain d4fabl1: 4fab L:1-112 [19906] Other proteins in same PDB: d4fabh1, d4fabh2, d4fabl2 part of Fab 4-4-20 complexed with fds, mpd |
Timeline for Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: