Lineage for Species: Human (Homo sapiens), cluster 3.1 [TaxId: 9606]

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 782778Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] [88522] (8 PDB entries)

PDB entries in Species: Human (Homo sapiens), cluster 3.1 [TaxId: 9606]:

  1. Domain(s) for 1dn0:
    1. 782785Domain d1dn0a1: 1dn0 A:1-107 [19830]
      Other proteins in same PDB: d1dn0a2, d1dn0b1, d1dn0b2, d1dn0c2, d1dn0d1, d1dn0d2
      part of Fab Kau cold agglutinin IgM
    2. 782786Domain d1dn0c1: 1dn0 C:1-107 [19832]
      Other proteins in same PDB: d1dn0a2, d1dn0b1, d1dn0b2, d1dn0c2, d1dn0d1, d1dn0d2
      part of Fab Kau cold agglutinin IgM
  2. Domain(s) for 1hzh:
    1. 782789Domain d1hzhl1: 1hzh L:1-107 [61445]
      Other proteins in same PDB: d1hzhh1, d1hzhh2, d1hzhh3, d1hzhh4, d1hzhk1, d1hzhk2, d1hzhk3, d1hzhk4, d1hzhl2, d1hzhm2
      part of intact IgG B12 antibody
    2. 782790Domain d1hzhm1: 1hzh M:1-107 [61447]
      Other proteins in same PDB: d1hzhh1, d1hzhh2, d1hzhh3, d1hzhh4, d1hzhk1, d1hzhk2, d1hzhk3, d1hzhk4, d1hzhl2, d1hzhm2
      part of intact IgG B12 antibody
      complexed with fuc, gal, man, nag
  3. Domain(s) for 1iqd:
  4. Domain(s) for 1n0x:
    1. 782779Domain d1n0xl1: 1n0x L:1-107 [91532]
      Other proteins in same PDB: d1n0xh1, d1n0xh2, d1n0xk1, d1n0xk2, d1n0xl2, d1n0xm2
      part of an anti HIV-1 Fab
    2. 782780Domain d1n0xm1: 1n0x M:1-107 [91534]
      Other proteins in same PDB: d1n0xh1, d1n0xh2, d1n0xk1, d1n0xk2, d1n0xl2, d1n0xm2
      part of an anti HIV-1 Fab
      complexed with cxs, gol, k, orn, so4
  5. Domain(s) for 1qlr:
    1. 782791Domain d1qlra1: 1qlr A:1-107 [19834]
      Other proteins in same PDB: d1qlra2, d1qlrb1, d1qlrb2, d1qlrc2, d1qlrd1, d1qlrd2
      part of Fab Kau cold agglutinin IgM
    2. 782792Domain d1qlrc1: 1qlr C:1-107 [19836]
      Other proteins in same PDB: d1qlra2, d1qlrb1, d1qlrb2, d1qlrc2, d1qlrd1, d1qlrd2
      part of Fab Kau cold agglutinin IgM
      complexed with fuc, nag
  6. Domain(s) for 2brr:
    1. 782782Domain d2brrl1: 2brr L:1-107 [129011]
      Other proteins in same PDB: d2brrh1, d2brrl2, d2brrx2, d2brry1
      automatically matched to d1hzhl1
      complexed with acy, nh2, so4
    2. 782783Domain d2brrx1: 2brr X:2-107 [129013]
      Other proteins in same PDB: d2brrh1, d2brrl2, d2brrx2, d2brry1
      automatically matched to d1hzhl1
      complexed with acy, nh2, so4
  7. Domain(s) for 2ghw:
    1. 782787Domain d2ghwb1: 2ghw B:132-240 [145198]
      Other proteins in same PDB: d2ghwa1, d2ghwb2, d2ghwc1, d2ghwd2
      complexed with cl
    2. 782788Domain d2ghwd1: 2ghw D:132-240 [145200]
      Other proteins in same PDB: d2ghwa1, d2ghwb2, d2ghwc1, d2ghwd2
      automatically matched to 2GHW B:132-240
      complexed with cl
  8. Domain(s) for 2ny7:

More info for Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: