Lineage for Species: Human (Homo sapiens), cluster 3.1 [TaxId: 9606]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018439Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] [88522] (8 PDB entries)

PDB entries in Species: Human (Homo sapiens), cluster 3.1 [TaxId: 9606]:

  1. Domain(s) for 1dn0:
    1. 2018445Domain d1dn0a1: 1dn0 A:1-107 [19830]
      Other proteins in same PDB: d1dn0a2, d1dn0b1, d1dn0b2, d1dn0c2, d1dn0d1, d1dn0d2
      part of Fab Kau cold agglutinin IgM
    2. 2018446Domain d1dn0c1: 1dn0 C:1-107 [19832]
      Other proteins in same PDB: d1dn0a2, d1dn0b1, d1dn0b2, d1dn0c2, d1dn0d1, d1dn0d2
      part of Fab Kau cold agglutinin IgM
  2. Domain(s) for 1hzh:
    1. 2018450Domain d1hzhl1: 1hzh L:1-107 [61445]
      Other proteins in same PDB: d1hzhh1, d1hzhh2, d1hzhh3, d1hzhh4, d1hzhk1, d1hzhk2, d1hzhk3, d1hzhk4, d1hzhl2, d1hzhm2
      part of intact IgG B12 antibody
    2. 2018451Domain d1hzhm1: 1hzh M:1-107 [61447]
      Other proteins in same PDB: d1hzhh1, d1hzhh2, d1hzhh3, d1hzhh4, d1hzhk1, d1hzhk2, d1hzhk3, d1hzhk4, d1hzhl2, d1hzhm2
      part of intact IgG B12 antibody
  3. Domain(s) for 1iqd:
  4. Domain(s) for 1n0x:
    1. 2018440Domain d1n0xl1: 1n0x L:1-107 [91532]
      Other proteins in same PDB: d1n0xh1, d1n0xh2, d1n0xk1, d1n0xk2, d1n0xl2, d1n0xm2
      part of an anti HIV-1 Fab
      complexed with cxs, gol, k, so4
    2. 2018441Domain d1n0xm1: 1n0x M:1-107 [91534]
      Other proteins in same PDB: d1n0xh1, d1n0xh2, d1n0xk1, d1n0xk2, d1n0xl2, d1n0xm2
      part of an anti HIV-1 Fab
      complexed with cxs, gol, k, so4
  5. Domain(s) for 1qlr:
    1. 2018452Domain d1qlra1: 1qlr A:1-107 [19834]
      Other proteins in same PDB: d1qlra2, d1qlrb1, d1qlrb2, d1qlrc2, d1qlrd1, d1qlrd2
      part of Fab Kau cold agglutinin IgM
    2. 2018453Domain d1qlrc1: 1qlr C:1-107 [19836]
      Other proteins in same PDB: d1qlra2, d1qlrb1, d1qlrb2, d1qlrc2, d1qlrd1, d1qlrd2
      part of Fab Kau cold agglutinin IgM
  6. Domain(s) for 2brr:
    1. 2018442Domain d2brrl1: 2brr L:1-107 [129011]
      Other proteins in same PDB: d2brrh1, d2brrl2, d2brrx2, d2brry1
      automatically matched to d1hzhl1
      complexed with acy, so4
    2. 2018443Domain d2brrx1: 2brr X:2-107 [129013]
      Other proteins in same PDB: d2brrh1, d2brrl2, d2brrx2, d2brry1
      automatically matched to d1hzhl1
      complexed with acy, so4
  7. Domain(s) for 2ghw:
    1. 2018448Domain d2ghwb1: 2ghw B:132-240 [145198]
      Other proteins in same PDB: d2ghwa_, d2ghwb2, d2ghwc_, d2ghwd2
      complexed with cl
    2. 2018449Domain d2ghwd1: 2ghw D:132-245 [145200]
      Other proteins in same PDB: d2ghwa_, d2ghwb2, d2ghwc_, d2ghwd2
      automated match to d2ghwb1
      complexed with cl
  8. Domain(s) for 2ny7:

More info for Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Human (Homo sapiens), cluster 3.1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: