SCOPe 2.06: Domain d1ubhl_: 1ubh L:

Lineage for d1ubhl_ (1ubh L:)

1. Root: SCOPe 2.06

2. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)

3. Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
   3 domains: (1) all-alpha; (2&3) alpha+beta

4. Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families)

5. Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)

6. Protein Nickel-iron hydrogenase, large subunit [56764] (5 species)

7. Species Desulfovibrio vulgaris [TaxId:881] [56766] (11 PDB entries)

8. Domain d1ubhl_: 1ubh L: [88418]
   Other proteins in same PDB: d1ubhs_
   complexed with cmo, f3s, fne, mg, mpd, sf4

Details for d1ubhl_

PDB Entry: 1ubh, 1.35 Å

PDB Description: three-dimensional structure of the carbon monoxide complex of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f

PDB Compounds: (L:) Periplasmic [NiFe] hydrogenase Large subunit

SCOPe Domain Sequences for d1ubhl_:

Sequence; same for both SEQRES and ATOM records:

>d1ubhl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
ssysgpivvdpvtrieghlrievevengkvknayssstlfrgleiilkgrdprdaqhftq
rtcgvctythalastrcvdnavgvhipknatyirnlvlgaqylhdhivhfyhlhaldfvd
vtaalkadpakaakvassisprkttaadlkavqdklktfvetgqlgpftnayflgghpay
yldpetnliatahylealrlqvkaaramavfgaknphtqftvvggvtcydaltpqriaef
ealwketkafvdevyipdllvvaaaykdwtqyggtdnfitfgefpkdeydlnsrffkpgv
vfkrdfknikpfdkmqieehvrhswyegaearhpwkgqtqpkytdlhgddryswmkapry
mgepmetgplaqvliaysqghpkvkavtdavlaklgvgpealfstlgrtaargietavia
eyvgvmlqeykdniakgdnvicapwempkqaegvgfvnaprgglshwiriedgkignfql
vvpstwtlgprcdknklspveasligtpvadakrpveilrtvhsfdpciacgvh

Timeline for d1ubhl_:

• d1ubhl_ first appeared in SCOP 1.65
  
• d1ubhl_ appears in SCOPe 2.05
  
• d1ubhl_ appears in SCOPe 2.07
  
• d1ubhl_ appears in the current release, SCOPe 2.08