Lineage for d1uaka_ (1uak A:)

  1. Root: SCOP 1.65
  2. 305035Class c: Alpha and beta proteins (a/b) [51349] (121 folds)
  3. 322868Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 322869Superfamily c.116.1: alpha/beta knot [75217] (5 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 322898Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (1 protein)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 322899Protein tRNA(m1G37)-methyltransferase TrmD [89630] (1 species)
  7. 322900Species Haemophilus influenzae [TaxId:727] [89631] (4 PDB entries)
  8. 322903Domain d1uaka_: 1uak A: [88382]
    complexed with sam

Details for d1uaka_

PDB Entry: 1uak (more details), 2.05 Å

PDB Description: Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition

SCOP Domain Sequences for d1uaka_:

Sequence, based on SEQRES records: (download)

>d1uaka_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae}
shmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggp
gmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegi
derliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfadglldc
phytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllk
eaqaehnslehh

Sequence, based on observed residues (ATOM records): (download)

>d1uaka_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae}
shmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggp
gmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegi
derliqteideewsigdyvltggelpamtlidavarfipgvlsfadglldcphytrpevl
egltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehnsl
ehh

SCOP Domain Coordinates for d1uaka_:

Click to download the PDB-style file with coordinates for d1uaka_.
(The format of our PDB-style files is described here.)

Timeline for d1uaka_: