Lineage for d1qgdb2 (1qgd B:2-332)

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1592643Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1592644Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 1593049Family c.36.1.10: TK-like PP module [88760] (3 proteins)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 1593068Protein Transketolase (TK), PP module [88761] (4 species)
  7. 1593084Species Escherichia coli [TaxId:562] [89656] (4 PDB entries)
  8. 1593092Domain d1qgdb2: 1qgd B:2-332 [88371]
    Other proteins in same PDB: d1qgda1, d1qgda3, d1qgdb1, d1qgdb3
    complexed with ca, so4, tpp

Details for d1qgdb2

PDB Entry: 1qgd (more details), 1.9 Å

PDB Description: transketolase from escherichia coli
PDB Compounds: (B:) protein (transketolase)

SCOPe Domain Sequences for d1qgdb2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1qgdb2 c.36.1.10 (B:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}
ssrkelanairalsmdavqkaksghpgapmgmadiaevlwrdflkhnpqnpswadrdrfv
lsnghgsmliysllhltgydlpmeelknfrqlhsktpghpevgktagvetttgplgqgia
navgmaiaektlaaqfnrpghdivdhytyafmgdgcmmegishevcslagtlklgkliaf
yddngisidghvegwftddtamrfeaygwhvirdidghdaasikraveearavtdkpsll
mcktiigfgspnkagthdshgaplgdaeialtreqlgwkyapfeipseiyaqwdakeagq
akesawnekfaayakaypqeaaeftrrmkge

SCOPe Domain Coordinates for d1qgdb2:

Click to download the PDB-style file with coordinates for d1qgdb2.
(The format of our PDB-style files is described here.)

Timeline for d1qgdb2: