Lineage for d1pkqa1 (1pkq A:1-107)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018687Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (51 PDB entries)
  8. 2018749Domain d1pkqa1: 1pkq A:1-107 [88148]
    Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe1, d1pkqe2, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj1, d1pkqj2
    part of humanized Fab 8-18c5

Details for d1pkqa1

PDB Entry: 1pkq (more details), 3 Å

PDB Description: Myelin Oligodendrocyte Glycoprotein-(8-18C5) Fab-complex
PDB Compounds: (A:) (8-18C5) chimeric Fab, light chain

SCOPe Domain Sequences for d1pkqa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1pkqa1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

SCOPe Domain Coordinates for d1pkqa1:

Click to download the PDB-style file with coordinates for d1pkqa1.
(The format of our PDB-style files is described here.)

Timeline for d1pkqa1: